Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00556 ATGGAAGGTGTTACGCACCCAATACCTCGAACGGTGGAGGAGGTGTTCGGTGACTTCAAGGGTCGACGTTCCGGTTTGATTAAAGCACTAACTTCTGACGTTGAAAAGTTTTATCAGCTGTGTGATCCGGAGAAGGAGAACTTGTGCCTTTATGGATTTCCAAATGAAACTTGGGAAGTCAATTTACCTGTTGAAGAAGTGCCTCCTGAGCTGCCAGAGCCTGCATTAGGTATTAACTTTGCTAGGGATGGGATGCAAGAGAGGGATTGGCTGTCACTGGTTGCTGTTCACAGTGATTCTTGGTTGCTTTCTGTTGCATTCTACTTTGGAGCACGCTTTGGATTTGGTAAAAATGAAAGGAAAAGACTTTTTCAGATGATAAACGATCTTCCTACCATATTTGAAGTAGTGACTGGTGCTAACAAGCAATCGAAGGAATCAGCTGCACATAATAATGGTAGCAAAAGCAAATCAAGCGGCAAGTCTCGCCAGTCTGAGTCTCATGCTAAGGCAGTCAAGATGTCTGGACTTCCCAAAGAAGATGATGAAAGTGGTGAAGATGAAGAGGAAGATGATGAACAAGGTGCCACCTGTGGAGCCTGTGGAGACAACTATGGGGCGGACGAGTTCTGGATTTGCTGTGATGTGTGTGAGAAATGGTTCCATGGTAAATGTGTAAAAATAACTCCTGCAAAGGCTGAGCATATAAAGCAGTACAAGTGCCCAAGTTGCAGTAACAAAAGGGCTAAAGTTTAA 756 0.4418 MEGVTHPIPRTVEEVFGDFKGRRSGLIKALTSDVEKFYQLCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQERDWLSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGANKQSKESAAHNNGSKSKSSGKSRQSESHAKAVKMSGLPKEDDESGEDEEEDDEQGATCGACGDNYGADEFWICCDVCEKWFHGKCVKITPAKAEHIKQYKCPSCSNKRAKV* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00556 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Pte18g00556 251 MobiDBLite consensus disorder prediction 144 196 - -
Pte18g00556 251 FunFam PHD finger alfin-like protein 190 246 - -
Pte18g00556 251 MobiDBLite consensus disorder prediction 161 180 - -
Pte18g00556 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pte18g00556 251 CDD PHD_AL_plant 198 247 IPR044104 -
Pte18g00556 251 MobiDBLite consensus disorder prediction 144 160 - -
Pte18g00556 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Pte18g00556 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0006355|GO:0042393
Pte18g00556 251 SUPERFAMILY FYVE/PHD zinc finger 186 248 IPR011011 -
Pte18g00556 251 MobiDBLite consensus disorder prediction 181 196 - -
Pte18g00556 251 Pfam PHD-finger 198 247 IPR019787 -
Pte18g00556 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Pte18g00556 251 SMART PHD_3 197 245 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00556 Pte-Chr18 11484804 11490167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00556 1 248 Alfin-like Transcription Factor Family AT1G14510 81.526 2.60e-131 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte18g00556 Alfin 1.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00556 K26274 - gmx:100807826 440.654