Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00541 ATGGGACGTGGGAAGATAACCATTGCACGCATCGAGAACAAAACCACAAGGCAGGTAACCTTTGCAAAACGAAGGAATGGATTGTTTAAGAAAACAAACGAGCTTTCTGTTCTTTGTGATGCTGAGATTGCCCTCATCATCTTCTCAAGCAATGGCAAGCTCTTTCAGTACCATAGTGAGTCAACAAGCATGGAAAACATCATAAAAAGGTATCAGATGGCAACAGGGACTCACCTTTCAGAATACAATGAGCAGGAACAGATTCATAATGAGTCCAAGAGAATGAGAGCTCAATGCCATCAGCTTCAGCTGTCCTTGAGCCGTTACACGGGTGAGGACCTAAGTTCTGTAGAACTTGAAGATCTTAATCTGCTAGAACAGCAGATCCAGAATTCTGTAGAGAAGGTCCGGGCAAGGAAGTATGAGCTGTTACAGCAGCAGATAGACAATCTCCGAAGGAAGCTGAAGGGTAGTCATGACCAAAGAGATGTGGAAACTGTGCAAAAGGATGAGGACCAAAGAGTGTTTCTACAGTTTCCATTCTCTGGTGAAGAGCAACCAGAAAATGTGATCCACATAGCAAACAACCTAATCCCTCAGTTTCAACCATATCGTCTGCAGCCAGCTCAGCCCAACCTTCAAGACTTCAACTTCTTCCGCTCCAGTTACGATTGA 675 0.443 MGRGKITIARIENKTTRQVTFAKRRNGLFKKTNELSVLCDAEIALIIFSSNGKLFQYHSESTSMENIIKRYQMATGTHLSEYNEQEQIHNESKRMRAQCHQLQLSLSRYTGEDLSSVELEDLNLLEQQIQNSVEKVRARKYELLQQQIDNLRRKLKGSHDQRDVETVQKDEDQRVFLQFPFSGEEQPENVIHIANNLIPQFQPYRLQPAQPNLQDFNFFRSSYD* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00541 224 Coils Coil 141 161 - -
Pte18g00541 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte18g00541 224 ProSiteProfiles K-box domain profile. 85 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte18g00541 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte18g00541 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte18g00541 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte18g00541 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte18g00541 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pte18g00541 224 FunFam MADS-box transcription factor MADS-MC 13 93 - -
Pte18g00541 224 Pfam K-box region 80 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte18g00541 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte18g00541 224 Coils Coil 119 139 - -
Pte18g00541 224 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pte18g00541 224 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Pte18g00541 224 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Pte18g00541 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00541 Pte-Chr18 11319807 11322364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00541 1 215 MADS-box Gene Family AT5G23260 42.276 1.03e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte18g00541 K-box 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00541 - - vvi:100249015 259.996