Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00534 ATGGAAAATTCCAACTCTGACTCTGAATATTTCTGGTGCACCATGCATCCTTCTCCAGACAAAGACAAAGACAGAGGCAAAGATACTGTCTTTGACGCGAGCAGTACTTACGGTTGTGCTTCTTCTTCAAGATCCAAGTCCGAAGCTTTGGTTTTATACGATGATGTCGCCACCGCTGCTGCTTCCGCCAGTAACTGCCACAGGCACCGTAACCCACGCAACCGACGCTCCAAATTGAATGAAACAACAGCCAGCACCAGCAACAACCGATTTCCTCAGCGCCCCAACTCCTCCGGTAAGTCCAATGTTCAGTTAAAGCCCAAGTATGTAAACAAGAAACCAGACCCTAGTGCGCCAAAGATCACCAGGCCTTGCAGTGAATGTGGTAAGAAGTTCTGGTCGTGGAAGGCTCTCTTTGGTCACATGCGGTGTCACCCTGAACGTCAATGGCGTGGAATCAACCCACCTCCCAACTTTCGTCGACAGCCTTCTTCTTCATCTCCATCCAACGAGGACGACAAGGACACCTTCCGCTTTACTGAGTGTCATGCTCATCCGTTCCAAGACGGCGGCGGTGCTGAGACAATGTTCACCCAGGATGAGCATGAGGTTGCGGCCTGTCTGCTATTGCTGGCGAATGGAGATGAGGGATACGTTGCGAAGGCCAACATCCTTCAAGATGAGACCACCCACAGCGACATGTACGCCCTGCAGGTACTGAATTGTCAAGATTTTGCTGGGGACGCCATCCATGCAAGTACTGTGCCTGCTGAAGACGAAGGAGTATCAATTGATTTCAGTTGCGGCAGGTTTGAGTGCTCGAGTTGTAAGAAGGTGTTTGGGTCACACCAAGCGTTGGGTGGCCACAGAGCTAGTCACAAAAATGTCAAGGGTTGTTTTGCTATTACAAGGACTGAGGAGGAAACATTGGACTGTAAAGATAGTACTACAAACGCAAGCACAGATAGTAAAACAGCGATAGCTTTGGGTAATGGCCATAAGTGCAGTATCTGTTCGAGGGTATTCTCAAGTGGACAAGCATTAGGTGGGCACAAGAGGTGTCACTGGGAGAAGGCGGACAATGAGACATTATCAGTGGGTCAAGGGATGACTAGCCCTCTTGCTGTTGCTGCAGAGCCTTCTGGAGCAGCCTTGAGCCTCAAGGAACATAATAATGTTAATGGTACTGGTAATAAGAACGATTTGGACTTGAATTTGCCAGCCCCACTTGAAGATGATTCATCCTCTTCGTACTCTTCGCCTTTGACTTTGGATTTGAGGTTGGGAATTTGA 1293 0.4888 MENSNSDSEYFWCTMHPSPDKDKDRGKDTVFDASSTYGCASSSRSKSEALVLYDDVATAAASASNCHRHRNPRNRRSKLNETTASTSNNRFPQRPNSSGKSNVQLKPKYVNKKPDPSAPKITRPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFRRQPSSSSPSNEDDKDTFRFTECHAHPFQDGGGAETMFTQDEHEVAACLLLLANGDEGYVAKANILQDETTHSDMYALQVLNCQDFAGDAIHASTVPAEDEGVSIDFSCGRFECSSCKKVFGSHQALGGHRASHKNVKGCFAITRTEEETLDCKDSTTNASTDSKTAIALGNGHKCSICSRVFSSGQALGGHKRCHWEKADNETLSVGQGMTSPLAVAAEPSGAALSLKEHNNVNGTGNKNDLDLNLPAPLEDDSSSSYSSPLTLDLRLGI* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00534 430 Gene3D Classic Zinc Finger 268 355 - -
Pte18g00534 430 MobiDBLite consensus disorder prediction 1 47 - -
Pte18g00534 430 SUPERFAMILY beta-beta-alpha zinc fingers 124 293 IPR036236 -
Pte18g00534 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 298 IPR013087 -
Pte18g00534 430 MobiDBLite consensus disorder prediction 62 121 - -
Pte18g00534 430 MobiDBLite consensus disorder prediction 78 105 - -
Pte18g00534 430 ProSitePatterns Zinc finger C2H2 type domain signature. 335 355 IPR013087 -
Pte18g00534 430 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Pte18g00534 430 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 49 429 - -
Pte18g00534 430 MobiDBLite consensus disorder prediction 147 175 - -
Pte18g00534 430 SUPERFAMILY beta-beta-alpha zinc fingers 332 358 IPR036236 -
Pte18g00534 430 Pfam C2H2-type zinc finger 124 147 - -
Pte18g00534 430 Pfam C2H2-type zinc finger 333 357 - -
Pte18g00534 430 Pfam C2H2-type zinc finger 270 294 - -
Pte18g00534 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Pte18g00534 430 ProSitePatterns Zinc finger C2H2 type domain signature. 273 293 IPR013087 -
Pte18g00534 430 SMART c2h2final6 123 145 IPR013087 -
Pte18g00534 430 SMART c2h2final6 333 355 IPR013087 -
Pte18g00534 430 SMART c2h2final6 271 293 IPR013087 -
Pte18g00534 430 MobiDBLite consensus disorder prediction 16 30 - -
Pte18g00534 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 333 355 IPR013087 -
Pte18g00534 430 MobiDBLite consensus disorder prediction 389 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00534 Pte-Chr18 11171845 11173730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00534 112 431 C2H2 Transcription Factor Family AT4G35280 42.679 1.74e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte18g00534 zf-C2H2_6 9.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00534 - - qsa:O6P43_011385 306.605