Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00531 ATGGCGAACAAGCCAATCCCAGTTGCCAATATCGATGCTTTAGTGCAAGTTGAGAAACAAAAGCAGTTGTCTTTGTTGATTTCATCTAGATCTAGTATTACTAGTGGTAATCCCAGTGAAATGGGGACTGGTAGTGCTGAAGTAGGAAGAAATGGCCGTGGTCATTGTCATGGGGTTACTCAAATGGTTGAAGTCATTGAATCAATTGGATCCTATCAAGGATTCAGGAGAACACAAAGGAAAGAGTGCTTCAAGTTGGTGAGGAGATTGAATCTTATGCTTCCTCTCTTGGAAGAAATAAGGGATGTTCATACTCAAACATCAATGCTTCCGCCTCAGCATTTGAATTGTCTAGATGAGTTGCTGAAAGCACTGCTCTCCGCCAAGAAACTTTTGAAGCAGTGTTACTGTGGCAGTAAGATTTATCTGGCATTGGAGAGTGAGGCTGTACTAAGCCAATTTCATGCTGTATATGACAAGCTCAATCAGGCTTTGGATGATATGCCTTACCAAGAACTTGGAGTTTCAGTTGAAGTTACAGAACAAGTTGAGCTTATGCGTACACAACTGAAAAGGGCGAAGAGACGGACTGATACGCAGGATATGGAACTAGCAATGGACATGATGGTTGTGTTCTCCAAAAATGAGGACAGGAATGCTGACAGTGCTATACTGCAAAGACTAGCAATCAACTTGGAACTTCATACTGTTGCAGACTTAAAAGCAGAAACAATAGCCGTTGAACATCTAATAGCAAAAAGAGGAGGTAGAAATTCTGACAGCAACCAGCAAATACTGGACCTTTTGAGAAAATTCAAAGAAATTGCAGGGGTTGATGATGATCTTTTACTCAGTCCTGCTTCGTCAAAAAATCTACAAAGGTGTCAGTCCTCAATAATACCCAATGAATTTCTCTGTCCAATTACACTAGAGATCATGACTGATCCTGTCATAACAGCAACTGGACAGACTTATGAGTGGGAAAGCATACATAGGTGGTTGGATTCTAACCATCGGACCTGTCCGAAGACCGGTCAAACATTGCATCACACATCACTAGCTCCAAATGTTGCCCTAAAAAATCTCATCCGGCAATGGTGTGAGAAGAATAACTACGAACTGCCTAAGAAAAATCCTTATATTGGCCTTAACATCTCTTGTGGTAAAATGCAAGAAGAAATCTCTTTGATAGTACAAACTCTCTCCTCTTCTGATAGAGATAAATTGAGAGAAGCTGTTCTCAAGATTCGATTGCTATCCCGGGAGAATCCTGACAACAGAATTCTCATAGCAAACAGTGGAGGATTACCTCCTTTGGTGCAGCTCCTTCGATATCCAGATCCTGAAATGCAAGAACAGACTGTCACTGCTCTCTTGAACTTGTCAATCAATGAGACAAATAAAAGACTGATAGCAGGTGAAGGCGCAGTTCCTGCTATAATTGAAATTCTGCAGAATGGGACTGAAGAGGCAAGAGAGAACTCTGCTGCAGCATTATTTAGCTTGGCCATGCTTGATGAGAATAAAGCATTGGTTGGAAATTTAAATGGCATTCCTCCTTTGGTTGAGCTTTTGCAGAATGGAACAGTTAGGGGGAAGAAGGATGCTGCAACTGCATTGTTTAACTTGTGTTTAAACCAAACCAACAAGCCTCGAGCCATTGAAGCAGGCATTATACCTAGATTACTTCGTATGCTTGAAGATAAAAACTTGGGTATGGTTGATGAGGCACTCTCAATCTTAAACTTGCTTGCTTCACATCCAGAGGGGCGAAATGAAATTGGAAGACTTTCTTTCATTGAAACTCTAGTAGGAATTATTGGAAGTGGAACCCCAAAGAACAAGGAGTGTGCGACATCAGTTCTTCTTGAGTTAGGGGCAAACAACTCATCTTTCATATTAGCTGCACTTCAATATGGGGTCTACGAACATTTGATAGATGTCACGATAAATGGAACCAACAGAGCTCAAAGAAAAGCAAACTCTCTTTTGCAGCTCATGAGTAAGTGTGAACATATTCCTTGA 2025 0.4109 MANKPIPVANIDALVQVEKQKQLSLLISSRSSITSGNPSEMGTGSAEVGRNGRGHCHGVTQMVEVIESIGSYQGFRRTQRKECFKLVRRLNLMLPLLEEIRDVHTQTSMLPPQHLNCLDELLKALLSAKKLLKQCYCGSKIYLALESEAVLSQFHAVYDKLNQALDDMPYQELGVSVEVTEQVELMRTQLKRAKRRTDTQDMELAMDMMVVFSKNEDRNADSAILQRLAINLELHTVADLKAETIAVEHLIAKRGGRNSDSNQQILDLLRKFKEIAGVDDDLLLSPASSKNLQRCQSSIIPNEFLCPITLEIMTDPVITATGQTYEWESIHRWLDSNHRTCPKTGQTLHHTSLAPNVALKNLIRQWCEKNNYELPKKNPYIGLNISCGKMQEEISLIVQTLSSSDRDKLREAVLKIRLLSRENPDNRILIANSGGLPPLVQLLRYPDPEMQEQTVTALLNLSINETNKRLIAGEGAVPAIIEILQNGTEEARENSAAALFSLAMLDENKALVGNLNGIPPLVELLQNGTVRGKKDAATALFNLCLNQTNKPRAIEAGIIPRLLRMLEDKNLGMVDEALSILNLLASHPEGRNEIGRLSFIETLVGIIGSGTPKNKECATSVLLELGANNSSFILAALQYGVYEHLIDVTINGTNRAQRKANSLLQLMSKCEHIP* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00531 674 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 475 517 IPR000225 GO:0005515
Pte18g00531 674 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 557 594 IPR000225 GO:0005515
Pte18g00531 674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 374 IPR013083 -
Pte18g00531 674 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Pte18g00531 674 FunFam RING-type E3 ubiquitin transferase 382 673 - -
Pte18g00531 674 ProSiteProfiles U-box domain profile. 299 373 IPR003613 GO:0004842|GO:0016567
Pte18g00531 674 Pfam U-box domain 300 371 IPR003613 GO:0004842|GO:0016567
Pte18g00531 674 FunFam RING-type E3 ubiquitin transferase 56 171 - -
Pte18g00531 674 Gene3D - 386 508 IPR011989 -
Pte18g00531 674 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Pte18g00531 674 FunFam RING-type E3 ubiquitin transferase 300 372 - -
Pte18g00531 674 SUPERFAMILY RING/U-box 300 375 - -
Pte18g00531 674 Pfam Armadillo/beta-catenin-like repeat 506 544 IPR000225 GO:0005515
Pte18g00531 674 Pfam Armadillo/beta-catenin-like repeat 423 462 IPR000225 GO:0005515
Pte18g00531 674 SMART arm_5 505 545 IPR000225 GO:0005515
Pte18g00531 674 SMART arm_5 546 586 IPR000225 GO:0005515
Pte18g00531 674 SMART arm_5 587 627 IPR000225 GO:0005515
Pte18g00531 674 SMART arm_5 423 463 IPR000225 GO:0005515
Pte18g00531 674 SMART arm_5 464 504 IPR000225 GO:0005515
Pte18g00531 674 Coils Coil 176 196 - -
Pte18g00531 674 Gene3D - 55 171 IPR036537 GO:0007166
Pte18g00531 674 SMART Ubox_2 303 366 IPR003613 GO:0004842|GO:0016567
Pte18g00531 674 SUPERFAMILY ARM repeat 394 668 IPR016024 -
Pte18g00531 674 CDD MLKL_NTD 77 191 - -
Pte18g00531 674 PANTHER U BOX DOMAIN-CONTAINING 80 670 - -
Pte18g00531 674 CDD RING-Ubox_PUB 301 353 IPR045210 -
Pte18g00531 674 Gene3D - 509 671 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00531 Pte-Chr18 11150027 11153841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00531 59 673 U-box Gene Family AT5G42340 60.552 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00531 - - tcc:18607402 867.455