Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00524 ATGGCAGCCATGAAAGACAAGAGCCCAGATTTGGACCTTCCGGGGTTCCGATTTCATCCAACTGACGAAGAACTACTTGAGTTCTATCTTAAAAGTGCTGTGTTTGGGAAGAAATTGAGATTCGACGTAATCGATTTTCTCAATATATACAACCACCATCCTCAGGAATTGCCTGGTTTAGCAAAGATTGGCGAGAGAGAATGGTACTTCTTTGTGGCAAGGGACAGAAAGCATGGCAGTGGGGGAAGACCCAATAGGACAACTGAAAATGGATTTTGGAAAGCCACTGGTTCTGATAGGAAAATAGTGAGTTTATCAGAACCAAAACGACAACTCGGTTTGAGGAAGACCCTTGTGTTTTATCAGGGAAGAGCTCCCAAAGGAACCAAGACTGATTGGGTTATGAATGAATACCGCTTCCCAAACAATCCTTTGCCAAAGGACATAGTGTTGTGCAAGATATATAGAAAGGCAACTTCCTTAAAGGTCTTGGAGCAAAGGGTAGCAATTGAGGAGGAGAGGAGGAACTTCAATGCTTCTCCTTCGTCACCTCCATATTCGTCGGAGACCATATCCTTTAGCAGCCAATTACGTGAAGACCAAATTATACAGATGCCAACTCTAACCCAAGATATTGTTCTGAAAGAAGAAACCCAACAAGCGTTTCTTCAAGAAAAGATCGAGAGTCATAACGATCAATTTTGTTCCAATACATCACCAAAGTTTCAGCTTGGGAAGGAAATCCTACCTGCACTATCAGAGCTACAAGTGCCTAAATTAACAGTTGATTGGACTCAAGACCCAATCTGGACTCATGAGTTGAACAGTCCTTGGCTTCCAAATTTGATGCTTTGTCCCAACATCTTAAATTTCTATTAA 879 0.4198 MAAMKDKSPDLDLPGFRFHPTDEELLEFYLKSAVFGKKLRFDVIDFLNIYNHHPQELPGLAKIGEREWYFFVARDRKHGSGGRPNRTTENGFWKATGSDRKIVSLSEPKRQLGLRKTLVFYQGRAPKGTKTDWVMNEYRFPNNPLPKDIVLCKIYRKATSLKVLEQRVAIEEERRNFNASPSSPPYSSETISFSSQLREDQIIQMPTLTQDIVLKEETQQAFLQEKIESHNDQFCSNTSPKFQLGKEILPALSELQVPKLTVDWTQDPIWTHELNSPWLPNLMLCPNILNFY* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00524 292 Gene3D NAC domain 21 161 IPR036093 GO:0003677|GO:0006355
Pte18g00524 292 Pfam No apical meristem (NAM) protein 14 139 IPR003441 GO:0003677|GO:0006355
Pte18g00524 292 SUPERFAMILY NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Pte18g00524 292 ProSiteProfiles NAC domain profile. 12 157 IPR003441 GO:0003677|GO:0006355
Pte18g00524 292 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00524 Pte-Chr18 11081916 11083433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00524 10 288 NAC Transcription Factor Family AT2G17040 56.429 4.19e-102 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte18g00524 NAM 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00524 - - cave:132166872 386.341