Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00496 ATGATGATAATGCAAAGCCTTGTTGAAAGGCTACGACCATTGGTAGGTTTGAATGGCTGGGACTACTGTGTTCTCTGGAAACTAAGAGAGGATCAAAGGTTTCTGTCTGAATCTCTCACTGATCATCTCTTATCTGATCTCTCTCCCTATAACTCATTTGATTATTGGTTCAGGTTTATTGAGTGGAGTGGATGTTGTTGTGCCGGAGCTGACCAAACCACTCAAAATGCAGGAGAAGAGCTTCTTTTTCCTGTGTCATCTGTTGTTCCATGCAGGGATAGTGAGATACCTCACCCCAGAACAAACCCCTGTGCTCTCCTTTCTCAGCTTCCCTCTTCGATTCCTTTGGACTCAGGGACTTATGCACAGAGCTTGATGACAAACCAAGTCAATTGGTTAAATGATTCAAATAGCACAATTACTTTGCAGGAAGCAATTGGAACCAGGGTTTTCATTCCAGTGTTTGGAGGACTAGTTGAGCTTTTTGTCAATAAACAAGTTTCTGAAGATCAGAATGTGATAGATTTTGTTACATCCCAGTGCAACCTCTTAATGGAGCAGGATGTCTTTATGAACTCAGTCAACATGGATAAAAGCTTCCTTGTTAATGCAAATTCCATGAGCAATATCCAGTCAAATCCATTTCTAGGATCTGAAAATGATGCAAAGGCTCATCTTACTACTAATCAACATTTACTTTGGTCGCATGACTCATTGCTTCTGGATAAACAAATGAACCCTCTAATGAAATCTAATGGATCAGATGAGCTTCAGGCTATGGAGGGATTTGAGAAGTACATGATGAGCAATACAAGAAACTCATTAGAAAGGAAGGAGGAGCAGGGCGATGACAGAGATTTAGTCAAACAAGAGTTGGGGAAATCAGATTCAGTCTCAGGTTGCAGTGATCAACTTGAAGACGAGGATGATGTTAAGTGCCGGCGCCGAAATGGGAAAGGTACTCAGTCCAAGAACCTTGTTGCTGAAAGGAGAAGAAGGAAGAAACTGAATGATCGCTTATACGCCCTAAGAGCCTTGGTGCCTAAGATATCTAAGTTGGATAGGGCATCCATTCTTGGGGATGCAATTGATTTTGTGAAGGAATTGCAGAAGCAAGCCCAAGAACTGAAAGATGAGCTAGAAGATAACTCAGATCATGATGGTGCTAGAAGCAACAACTGCATCAATGGCCATTTAGATATTCTTACTCAAAATGGATCTCACCATCTTGGACACAAACTTGAACATGACAAACCCCCAACGGGTTTTCATTTAGGAATATCAGGAAATGACAACATCTCAAAACAAAACCAGGAATTGGACAATTCCGTTGACAGGATAGAGCAGATGGAGCCACAAGTCGAAGTGGCTCTCATAGAAGGAAATGAATTCTTTGTGAAAGTTTTCTGCGAGCATAAGCCAGGTGGATTTTCAAGATTGATGGACGCGTTTGAATCACTTGCCATGGAAGTAACAAACGCAAATGTAACCAGTCACAAGGGGCTTGTATCCCATGTTTTTAAAGTTGAGAAAAAGGACAGTGAAATTGTTCAGGCTGAAGATGTAAGGGATTCTTTGCTTGAGATAACAAGGAATCCACACAGAGGTTGGACAGACATTGCTAAAGGATCAGATAATGGCGTTGGCATGGATTATAACCATCACCATCGAGTTGCTAACCAACCACTTAGTCCCTACCAACACCACCAGTTACACCAACTTCAAGGTTGA 1731 0.4165 MMIMQSLVERLRPLVGLNGWDYCVLWKLREDQRFLSESLTDHLLSDLSPYNSFDYWFRFIEWSGCCCAGADQTTQNAGEELLFPVSSVVPCRDSEIPHPRTNPCALLSQLPSSIPLDSGTYAQSLMTNQVNWLNDSNSTITLQEAIGTRVFIPVFGGLVELFVNKQVSEDQNVIDFVTSQCNLLMEQDVFMNSVNMDKSFLVNANSMSNIQSNPFLGSENDAKAHLTTNQHLLWSHDSLLLDKQMNPLMKSNGSDELQAMEGFEKYMMSNTRNSLERKEEQGDDRDLVKQELGKSDSVSGCSDQLEDEDDVKCRRRNGKGTQSKNLVAERRRRKKLNDRLYALRALVPKISKLDRASILGDAIDFVKELQKQAQELKDELEDNSDHDGARSNNCINGHLDILTQNGSHHLGHKLEHDKPPTGFHLGISGNDNISKQNQELDNSVDRIEQMEPQVEVALIEGNEFFVKVFCEHKPGGFSRLMDAFESLAMEVTNANVTSHKGLVSHVFKVEKKDSEIVQAEDVRDSLLEITRNPHRGWTDIAKGSDNGVGMDYNHHHRVANQPLSPYQHHQLHQLQG* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00496 576 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 164 531 - -
Pte18g00496 576 CDD bHLH_AtAMS_like 323 385 - -
Pte18g00496 576 SMART finulus 326 375 IPR011598 GO:0046983
Pte18g00496 576 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 369 IPR011598 GO:0046983
Pte18g00496 576 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 179 IPR025610 -
Pte18g00496 576 Coils Coil 359 386 - -
Pte18g00496 576 Pfam Helix-loop-helix DNA-binding domain 327 370 IPR011598 GO:0046983
Pte18g00496 576 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 381 IPR036638 GO:0046983
Pte18g00496 576 Gene3D - 309 385 IPR036638 GO:0046983
Pte18g00496 576 Coils Coil 430 450 - -
Pte18g00496 576 MobiDBLite consensus disorder prediction 291 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00496 Pte-Chr18 10713158 10715569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00496 4 561 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 44.884 7.38e-148 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte18g00496 bHLH-MYC_N 1.3e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00496 - - qsa:O6P43_002137 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g00496 18 10713158 10715569 Pte18g00496 18 10713158 10715569 RCT