LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte18g00484	ATGTCGAAGGAAGTGAGTGAAGAAGGACAAACCCACCATGGAAAAGACTACGTCGACCCACCACCAGCTCCTCTTATCGACGTAGCTGAGCTCAAGCTTTGGTCTTTCTACAGGGCTCTCATAGCTGAGTTCATAGCCACCCTTCTCTTCCTCTACGTCACGGTTGCCACTGTCATCGGTCACAAGAAGCAAACTGGAGCTTGTGATGGGGTTGGCCTTTTGGGCATAGCGTGGGCATTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCCGGTATCTCTGGTGGACACATCAACCCTGCTGTGACATTCGGGTTGTTCTTGGCTAGGAAGGTGTCTCTAATTCGGGCTTTGGCGTACATGGTTGCTCAGTGTGCTGGGGCCATCTGCGGGGTTGGTTTGGTCAAGGCTTTCATGAAGCACTCCTACAACTCACTTGGTGGTGGTGCTAACGGTGTCAACGCTGGTTACAGTAAAGGCACAGCTTTGGGTGCTGAGATTATTGGCACCTTTGTGCTTGTCTACACTGTCTTCTCCGCCACTGATCCCAAGCGAAGTGCTCGTGATTCCCACGTCCCTGTAAGTCAAATCTCATCTTGTTTTTGTAGCTAA	615	0.5089	MSKEVSEEGQTHHGKDYVDPPPAPLIDVAELKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGACDGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRALAYMVAQCAGAICGVGLVKAFMKHSYNSLGGGANGVNAGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVSQISSCFCS*	205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte18g00484	204	SUPERFAMILY	Aquaporin-like	30	194	IPR023271	-
	Pte18g00484	204	Gene3D	Glycerol uptake facilitator protein.	23	202	IPR023271	-
	Pte18g00484	204	PRINTS	Major intrinsic protein family signature	117	136	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pte18g00484	204	PRINTS	Major intrinsic protein family signature	38	57	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pte18g00484	204	PRINTS	Major intrinsic protein family signature	80	104	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pte18g00484	204	PRINTS	Major intrinsic protein family signature	166	184	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pte18g00484	204	PANTHER	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	7	196	IPR034294	-
	Pte18g00484	204	ProSitePatterns	MIP family signature.	98	106	IPR022357	-
	Pte18g00484	204	Pfam	Major intrinsic protein	31	194	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte18g00484	Pte-Chr18	10535723	10537169	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte18g00484	1	195	Major Intrinsic Protein MIP	AT4G35100	90.256	7.26e-130	365

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte18g00484	K09872		-	twl:120002354	367.081