Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00471 ATGGGAAGGTCTCCTTGCTGCGAAAAAGCTCATACAAACAAAGGTGCATGGACCAAAGAGGAGGATGATCGACTGATAGCTTATATCAAGGCTCACGGTGAGGGATGCTGGAGATCTCTACCAAAAGCAGCAGGTCTTCTCCGGTGCGGAAAAAGTTGTCGGCTTCGCTGGATCAACTATCTCAGACCTGATCTTAAGCGTGGCAATTTCACTGAAGAAGAAGATGAGCTCATCATCAAACTCCACAGTCTGCTTGGCAACAAGTGGTCTTTAATTGCAGGGAGATTGCCTGGGAGGACCGACAATGAGATAAAGAACTACTGGAACACCCATATAAGAAGAAAGCTATTGAATAGAGGAATTGACCCTGCAACGCACCGGCCTCTGAATGAGGCTAGTCAGAGTCAGGAAACCACAACAATTTCTTTTGCTGCCTCCACTGTTACACCTAAACAGGAAGATAATAACATAAATGAGTTCGGGATGCTGGCCAAGGATGATGCAGAAAAACCAGTGCAAGAAAAATGCCCTGACTTGAACCTGGAGCTAAGAATTAGCCCCCCACATCAAAACCAGATTGACCAGCCATTGAAGACTGGAGGCAGGAGCCGTTGTTTTGCTTGCAGTTTGGGATTGCAGAACAGTAAGGATTGCAGCTGCGGGATTGAGCATGTTGCCGGGAGTACTAGTGGCAGTGGCAGTACTGGTTATGATTTCTTGGGCTTGAAACACGGTAGTATTTTGGATTACAGAAGCTTAGAAATGAAATGA 771 0.4617 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEASQSQETTTISFAASTVTPKQEDNNINEFGMLAKDDAEKPVQEKCPDLNLELRISPPHQNQIDQPLKTGGRSRCFACSLGLQNSKDCSCGIEHVAGSTSGSGSTGYDFLGLKHGSILDYRSLEMK* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00471 256 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 165 - -
Pte18g00471 256 CDD SANT 69 112 IPR001005 -
Pte18g00471 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte18g00471 256 CDD SANT 16 61 IPR001005 -
Pte18g00471 256 Gene3D - 14 66 - -
Pte18g00471 256 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte18g00471 256 Gene3D - 68 142 - -
Pte18g00471 256 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte18g00471 256 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte18g00471 256 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte18g00471 256 SMART sant 66 114 IPR001005 -
Pte18g00471 256 SMART sant 13 63 IPR001005 -
Pte18g00471 256 FunFam MYB-related transcription factor 13 66 - -
Pte18g00471 256 FunFam MYB transcription factor MYB48 69 170 - -
Pte18g00471 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte18g00471 256 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00471 Pte-Chr18 10317476 10318900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00471 1 257 MYB Transcription Factor Family AT4G38620 65.744 4.41e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g00471 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00471 K09422 - qsa:O6P43_011463 416.387