Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00442 ATGGGTGGTGGTAGAGTCGAAGTGATAAGCAGCAATGGATGCTCTAGGATGTTTGCTGGGTTTTCTCCTTCATTGTCTGCATTCAGAGGGCTGGAACCTATGTTCCCTGCTTCATCCCCTATCAAGTCTGAGACAACGACTGTTCGTCCGGGCGCCCCCTTTGCTGGTTTAGTCATCTGCGTCACTGGTCTATCCAAAGAAGCAAGGAAACAAGTGATGGAAGCCACCGAGAGATTAGGTGGCCAATATAGCCCTGATTTACACCCTCAATGTACCCATTTGGTTGTTCAGATATCCTTCCTTATCATCAATAGCTTGCTAGTAGTGGTAATATTCTGTGGAGGACGCAAGCTTGAGCATGGGTTGAAGTACGGAGCTAGAAATGGTCTATTTATTGTCACCATTGGATGGTTTGTCGACAGTGTCAGGAACAATGTGAGGTTGAATGAATCCCTTTATAGTGCTAGGAATTCTGGAGATAATGAAAAGCACTTGGATGAGTTAAATCGCCTTGTTGGGCATACAGGAGCTGAAAACTCTTGTTTTCCTGTCAGTATTCAGGCTGCAAAGCAATTTAATGTGTCAGATGAACCTCAGAGAATTTCTTCTAGAGAATCAAGGGACTCAACTTTTTCTGGTTGCTCAATCTATGTTGATTCAGATGTTTCGTCCGAGATGCAAGATAAGGTTGTTGAGACTACTGTTAGAGAAGGTGCAAGTCTTCTTAAAAGGTGGTTTGTTGGGTGCAGCGTTTCTCATGTGGTCTGTGAAGTCGCGTCAGTTGGGAAGTATCTTGGCCATTCTATTAACCTTGTCACACCTCACTGGATTCTGAAAACAGCAAAGGAGAAGCATATGCAAAGGGTAGTTCATATCTCTGCTGACTTGGCCAGGCAGGTTGGGATGAGGCTTGAAGATATTCAAAATGGTGTTACAAGGAAGGAAATAACAGAACAAAATAACCTTGAAAAAATCCAGAAAGCCAGAAGTGCGTCAAACTACAAAGAAAGGCTGCAAATTGTGAATTCTGCAAAAACTGGTGTCAGGAATCGCCGTGGTCGACGTATGCAGACTTGTCAGACTCCCATAAGGCCAATAACACCAAGTAACCTTCTGGATAATATCTGCTGGACAGTGTCAGAACCACCTTCAACTGCTTCAATTTACACAGACTCTCTTAGTGCTGGTGATGCCAATGAACGTCATTGTGAGCTTTTTTATGAAAAGGGGGATGTAAACATACCAGAAGCTTCATTTGCACACTCCACTCGACCTCTTACAGAAAGCGAGAAGTCTGAGGTGGTATTTAAACACAATTTTCTTACCATACTCTTCCCGGTCGATCGATTTTCTGAGATGGGGCCTTCTTCAAGAACTTTCTTTAGCGCCAATGGCTTTACATGTCTCCAAGTGTTGGGTCATATCTTTGCATTTTATCAGGAGAATCTATCAGACCATGAAATAGAAGCTGCAATTCACACAGATTCTAGACATGCTGACCGGCTCCGATCAGTGTACTCCAGTAAGGAAGCAGCAGATTCTGGATGTGTGGAATTCAGAAGGATTGAATTCTTGGGTAGCCGTAGATTTTTTGAAATGTTAAAGCGTGTCAATGGTGATAACAGCTGTAATGTATATGAACTGGTAGTTAGAGCTTGA 1659 0.4316 MGGGRVEVISSNGCSRMFAGFSPSLSAFRGLEPMFPASSPIKSETTTVRPGAPFAGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQISFLIINSLLVVVIFCGGRKLEHGLKYGARNGLFIVTIGWFVDSVRNNVRLNESLYSARNSGDNEKHLDELNRLVGHTGAENSCFPVSIQAAKQFNVSDEPQRISSRESRDSTFSGCSIYVDSDVSSEMQDKVVETTVREGASLLKRWFVGCSVSHVVCEVASVGKYLGHSINLVTPHWILKTAKEKHMQRVVHISADLARQVGMRLEDIQNGVTRKEITEQNNLEKIQKARSASNYKERLQIVNSAKTGVRNRRGRRMQTCQTPIRPITPSNLLDNICWTVSEPPSTASIYTDSLSAGDANERHCELFYEKGDVNIPEASFAHSTRPLTESEKSEVVFKHNFLTILFPVDRFSEMGPSSRTFFSANGFTCLQVLGHIFAFYQENLSDHEIEAAIHTDSRHADRLRSVYSSKEAADSGCVEFRRIEFLGSRRFFEMLKRVNGDNSCNVYELVVRA* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00442 552 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 552 - -
Pte18g00442 552 Pfam twin BRCT domain 57 97 IPR001357 -
Pte18g00442 552 ProSiteProfiles BRCT domain profile. 49 155 IPR001357 -
Pte18g00442 552 ProSiteProfiles BRCT domain profile. 206 284 IPR001357 -
Pte18g00442 552 Pfam Family of unknown function (DUF6699) 375 536 IPR046522 -
Pte18g00442 552 SUPERFAMILY BRCT domain 51 155 IPR036420 -
Pte18g00442 552 Gene3D BRCT domain 52 157 IPR036420 -
Pte18g00442 552 SUPERFAMILY BRCT domain 209 287 IPR036420 -
Pte18g00442 552 CDD BRCT_TopBP1_rpt2_like 53 145 - -
Pte18g00442 552 Gene3D BRCT domain 190 289 IPR036420 -
Pte18g00442 552 SMART BRCT_7 51 145 IPR001357 -
Pte18g00442 552 SMART BRCT_7 208 284 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00442 Pte-Chr18 9989419 9994051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00442 53 158 Core DNA Replication Machinery Family AT1G77320 33.019 4.35e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00442 - - qsa:O6P43_015824 741.11