Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00440 ATGGAACAAAGCATCCTATGTCGTCCGAAATACACTGAGCATAACAGTGTTACCAAGAAGCAGACCAAACCTCAAATGACTAAGAAGATGTCTGATGTAACAAATCGGATAGAGCCCAGAGTTGTACGGATTTCTGTCACTGATCCATATGCTACAGACTCCTCTAGTGATGATGAGAGTGAGCGATGCTGTCCTCGAGGGCGAGTGAAGAGGTACGTGAATCAAATTGACATTGGAATGGGTAGCAAGAACAGTGCCAGTGTGGTTCCCAATGCTAGAAAGAGACCGGCAGAAACAGCCACTTGCCGGCGGCCGCTGAAGTTAAAAGTCCAAGCTAGAACGAATGGTGGTGGCAGCAGAAAGTTCCGTGGAGTACGACAAAGACCGTGGGGTAAATGGGCGGCTGAGATTAGAGATCCTGCTCGTCGTGTACGGCTATGGTTAGGTACCTTTGATACAGCAGAAGAAGCAGCTATGGTGTATGACAATGCAGCTATTAAACTCAGAGGACCTGACGCTTTAACGAACTTTGTTACCCCACCTCCTAAAGAAAAGCCTGCAACAGAGGAGGCCATATCAGAGAAGACTGAAATCAATGTTGTTGTGAGGTCAGACGCTTCTGCCTCAGGATACGAGTCAGCAGACGAGTCAACACACAATCTCTCATCTCCAACTTCAGTGCTGCATTTCAGAACCAACTCCAGCGAAGAAACACTACCACCAAAACCGGCCGCACCAGCCTGCAAACTGGAACAAACTGATGAGCCGTTCGGGGAGTCTCAAGGGGATCAGGCAAGCTTTGCTGATGCCAGTGGAGACTTCTTCCGGCTTGAAATGCCGATTTTGGATGAATACTTCTTCAACTTCTCAAACCCAGAACACCAAATGCTATTTGAAGAACCACCATCTTTGCTATTTCCAGATGAAAATTTCACTGACATACTTGCGGACTCAAGAATAAGCCTTGATGTTAATGATGATAGGCTTCCTGCTTCACCTTCAACGTTGTGCCTGGTCGATGATTACTTCCAAGACATTATGTTTGCATCAGACCCTCTTGTCGTTCTGTAA 1071 0.4678 MEQSILCRPKYTEHNSVTKKQTKPQMTKKMSDVTNRIEPRVVRISVTDPYATDSSSDDESERCCPRGRVKRYVNQIDIGMGSKNSASVVPNARKRPAETATCRRPLKLKVQARTNGGGSRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFDTAEEAAMVYDNAAIKLRGPDALTNFVTPPPKEKPATEEAISEKTEINVVVRSDASASGYESADESTHNLSSPTSVLHFRTNSSEETLPPKPAAPACKLEQTDEPFGESQGDQASFADASGDFFRLEMPILDEYFFNFSNPEHQMLFEEPPSLLFPDENFTDILADSRISLDVNDDRLPASPSTLCLVDDYFQDIMFASDPLVVL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00440 356 CDD AP2 121 177 IPR001471 GO:0003700|GO:0006355
Pte18g00440 356 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Pte18g00440 356 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Pte18g00440 356 MobiDBLite consensus disorder prediction 1 32 - -
Pte18g00440 356 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Pte18g00440 356 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Pte18g00440 356 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Pte18g00440 356 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 254 - -
Pte18g00440 356 MobiDBLite consensus disorder prediction 18 32 - -
Pte18g00440 356 SUPERFAMILY DNA-binding domain 121 178 IPR016177 GO:0003677
Pte18g00440 356 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Pte18g00440 356 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00440 Pte-Chr18 9941879 9942973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00440 1 315 AP2-EREBP Transcription Factor Family AT4G27950 44.582 8.56e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte18g00440 AP2 9.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00440 - - qsa:O6P43_015048 348.206