Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00420 ATGGGTAGAGCGAAGCTTCAGATCAAGAAGATCGAGAACACAACAAATAGGCAGGTCACTTTCTCTAAGAGAAGAAATGGTTTAATCAAGAAGGCTTATGAGCTTTCAGTTCTATGTGATGTTGATGTAGCACTCATCATGTTTTCGCCTTCTGGAAGAGCTAGTTTATATTCTGGAAGAAAAAGGTTACACAACCAAGAGGGAATCCAACAACTGGTCACCACCTACAAGTCTCACTTGGAAAATGTGGAGAACAAGCTAAGAATATTTGAAGGAGATCCTTCTGAAATAACAACCCTATTTGAGGCTGAATATCGAGAGCAAGTGCTAGAGGAAACTCTCAAACGAGTCCACCTGCAAAGGAGAATCATGGAGGAAGAAGAGTATAATACCAGTCGTCCATCATTTCAGGTGCCACTACGAAAGCCAAGAACAGCCGATGGACTCATACTTGAAAGGTCGAAAAACTTGGTAAATTGGCCACCACAAAGAGATCCACAGATTCAGATATTTAATTCCCGGGCCATTAGTAGTTTCCTTCCTCAAAGAGAGAAACAACAAATAGTTGAGACCACGTCTTCCCATCGAAACATGAATTGTGATGTACAAAGGGGTTTGCATGACAACACTAATCCACAACTTCCAGAGGTCTAA 654 0.4144 MGRAKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRASLYSGRKRLHNQEGIQQLVTTYKSHLENVENKLRIFEGDPSEITTLFEAEYREQVLEETLKRVHLQRRIMEEEEYNTSRPSFQVPLRKPRTADGLILERSKNLVNWPPQRDPQIQIFNSRAISSFLPQREKQQIVETTSSHRNMNCDVQRGLHDNTNPQLPEV* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00420 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte18g00420 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte18g00420 217 SUPERFAMILY SRF-like 2 65 IPR036879 GO:0003677|GO:0046983
Pte18g00420 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 149 - -
Pte18g00420 217 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Pte18g00420 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Pte18g00420 217 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Pte18g00420 217 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 74 - -
Pte18g00420 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte18g00420 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte18g00420 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00420 Pte-Chr18 9710964 9714477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00420 1 65 Type I MADS-box Gene Family AT1G22130 78.462 2.07e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte18g00420 SRF-TF 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00420 - - zju:107420509 211.075