Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00419 ATGAAAGAGCAAGTACATATTCATGACTACCAACCATACCACAGGAAGAGGAGAGTTTGGCTAGGCACATTTGAAATAGCCAAAGAAGCAGCCAAAGCCAATGACCAAGCATCCATTTTAATGAGCAGTAGAAACACAAAAACCAACTTCCCAATATCTCAAACATTGTGCGGTGAACCCAAACCAGTTGAGGATTCCCTATCTTCACCAAAAGGTCTATAA 222 0.4099 MKEQVHIHDYQPYHRKRRVWLGTFEIAKEAAKANDQASILMSSRNTKTNFPISQTLCGEPKPVEDSLSSPKGL* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00419 73 Gene3D AP2/ERF domain 3 53 IPR036955 GO:0003700|GO:0006355
Pte18g00419 73 ProSiteProfiles AP2/ERF domain profile. 1 51 IPR001471 GO:0003700|GO:0006355
Pte18g00419 73 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 59 - -
Pte18g00419 73 SMART rav1_2 6 57 IPR001471 GO:0003700|GO:0006355
Pte18g00419 73 MobiDBLite consensus disorder prediction 51 73 - -
Pte18g00419 73 SUPERFAMILY DNA-binding domain 10 53 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00419 Pte-Chr18 9664859 9674798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00419 16 59 AP2-EREBP Transcription Factor Family AT1G15360 63.636 1.18e-15 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte18g00419 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00419 - - pvy:116110590 82.8037