LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte18g00418	ATGGCTTCAACTGAGAAATTCGACGACCCTGTAAAGGTCTTAGCTGGTTTCCTTCTACGGTTTTGCTCAAACCAGCTACGTTCCATCGCGCTCTGTCCGGATTCTAAGCTCCATTACCCGCTCTATGTCGATTTTGCAGAGTTGATGGAAGACAACCCTCTCATTGCGAACTGTGTATTCTCCAAACCCACTGTGTATTTGCGACTTTTTGACCAGGCTGCTGCTTGGGCCCAGAATATTGCACTGGGGGATTTGAAAAAAGGTGACAGAAGTGGGATTCATGGGAAATCAATTCATGTTCGTATCAATGTCAGTGGGTCTCCACTTGAATGCCCTGAGACTTTTCCAAGCATTGGTGGTGTGAGAGTTAGGCATCATGGAATTCTTCTTACAATCAGAGGGACAGTTATCCGGTCAGGAGCAATAAAGATGTACGAAGGAGAAAGATGGTACATGTGCCACAAGTGCAAGGACAAACTCCAAGTTTTTCCTGAGTTGGAAGCTAGAAATTCTATATCACTGCCTTCAGTTTGCCCTATACTGAATCCTAAACCATGTGGGGGCACAAAGTTTGAGTATATAGAGAACTCCATAGTCTGTCACGATTATCAAGAAATCAAAATTCAAGAAAGCACCCAAGTACTTGGTGTTGGGGCAATTCCTCGTTCAATTCCTGTCATCTTGAAGGATGACCTTGTCGATATTGTTAAAGCTGGAGATGATGTGATTGTCACTGGGATCTTAACAGCAAAGTGGTCTCCGGAATTAAAAGATGTTCGCTGTGACCTTGATCCTGTTTTAGTAGCAAATCATGTGAGGCGAACTAATGATTTCAAGTCAGAACTTGATATCCCAGATGATGATGTTATTCAATTTAAGCAGTTTTGGTTGGATTTCAATGATGCACCTTTAAAAGGTAGAAATGCTATTTTGCGAGGAATTTGTCCACAAATTTTCGGACTCTTTACGGTCAAGCTTGCAGTTGCGTTGACTCTTATTGGAGGTGTTCAACAAGTTGATGCTTCGGGAACAAAGATACGGGGAGAGTCTCATTTGCTTCTAGTCGGTGATCCTGGTACAGGCAAGTCTCAGTTCTTGAAATTTGCTGCAAAGTTAAGCAATAGGTCTGTTATTACGACTGGGTTAGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTAAAAGATGGAGGAGAGTGGATGTTAGAAGCCGGGGCACTTGTTCTTGCAGATGGAGGACTTTGTTGCATAGATGAATTTGACAGTATGAGGGAACATGACAGGGCTACTATCCATGAAGCAATGGAGCAGCAGACGATAAGCGTTGCTAAGGCTGGTCTGGTAACTACACTCAGCACTAGAACCATTGTATTTGGAGCAACGAATCCTAAGGGACAATATGATCCTGATCAACCTCTCTCTGTCAACACCACACTTTCTGGTCCTCTATTAAGCAGATTCGATATAGTCCTCGTCCTCTTGGATACAAAGAATCCTGAGTGGGATGCAGTTGTTTCATCCCACATTTTGGCTCAGGCTGAATCAGAAAAAACTAGGCATGGTGGAGATCTAGCAAATATCTGGTCACTTCCCATGCTTAAGAGGTACATACACTTTGTCAAGGAAAACTTCAGGCCAGGTCTAACAAGAGAGGCTGAAATTGTCATATCCAGCTATTATCAACTCCAAAGGAAATCTGCAACTCATAATGCAGCTAGGACAACTGTGCGCATGCTGGAGAGTTTGATACGCTTAGCTCAAGCTCATGCAAGGCTTATGTTCAGAAATAAGGTGACAAGGTTGGATGCCATTACTGCAATTTTGTGCATTGAATCTTCAATGACTACCTCAGCCATTGTTGATACTATTGGGAATGCTCTGCACACCAATTTTACTGACAACCCCGATGAAGACTATGCCAAGCAAGAAAAGCTCATCATCGAGAAGTTGCAATCAGATGATTTTTCTACCATGAGCGACATTCAAGGTTTGTGCAGATGA	2001	0.4308	MASTEKFDDPVKVLAGFLLRFCSNQLRSIALCPDSKLHYPLYVDFAELMEDNPLIANCVFSKPTVYLRLFDQAAAWAQNIALGDLKKGDRSGIHGKSIHVRINVSGSPLECPETFPSIGGVRVRHHGILLTIRGTVIRSGAIKMYEGERWYMCHKCKDKLQVFPELEARNSISLPSVCPILNPKPCGGTKFEYIENSIVCHDYQEIKIQESTQVLGVGAIPRSIPVILKDDLVDIVKAGDDVIVTGILTAKWSPELKDVRCDLDPVLVANHVRRTNDFKSELDIPDDDVIQFKQFWLDFNDAPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQQVDASGTKIRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAQAESEKTRHGGDLANIWSLPMLKRYIHFVKENFRPGLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNKVTRLDAITAILCIESSMTTSAIVDTIGNALHTNFTDNPDEDYAKQEKLIIEKLQSDDFSTMSDIQGLCR*	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte18g00418	666	CDD	MCM9	309	613	-	-
	Pte18g00418	666	Gene3D	-	121	250	IPR012340	-
	Pte18g00418	666	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	433	446	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pte18g00418	666	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	456	468	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pte18g00418	666	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	405	419	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pte18g00418	666	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	347	362	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pte18g00418	666	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	483	491	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pte18g00418	666	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	40	652	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Pte18g00418	666	Pfam	MCM P-loop domain	308	511	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pte18g00418	666	Pfam	MCM AAA-lid domain	532	613	IPR041562	-
	Pte18g00418	666	Gene3D	-	145	201	-	-
	Pte18g00418	666	ProSiteProfiles	MCM family domain profile.	306	509	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pte18g00418	666	SUPERFAMILY	Nucleic acid-binding proteins	38	257	IPR012340	-
	Pte18g00418	666	Gene3D	-	291	619	IPR027417	-
	Pte18g00418	666	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	316	620	IPR027417	-
	Pte18g00418	666	FunFam	Probable DNA helicase MCM9	284	618	-	-
	Pte18g00418	666	Pfam	MCM OB domain	121	249	IPR033762	-
	Pte18g00418	666	SMART	mcm	114	615	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Pte18g00418	666	SMART	AAA_5	348	497	IPR003593	GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte18g00418	Pte-Chr18	9596986	9608653	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte18g00418	1	638	Core DNA Replication Machinery Family	AT2G14050	73.906	0.0	980

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte18g00418	K10738		-	qsu:111990150	1090.1