Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00386 ATGCAAGCATCAGAGCAGCATAGGAGTTCAGGCTTGTCCAATGGGTCGCGTTATCAACCTATTCCACAAATGGAAGCCTACTGTTTGCCTCAGATTCGAAGCTTAAATTCTTCGAATAATCAATTCCATTATGACCATGTGATTCAACACATGTCATCTCCCATTTCCAGTGGGGTTTACTGCACATTGGAGTCATCATCTGCGAGTGCCAATTACAAACTTCATAATTCTCCATCAATTGCTAGCTTCTCGCCTAATGGAAGCCCGATATCGCAGCCGGATTCTCAGTCATATCTTTCAGATCAGCACCATTCTGCTGACAATATCTATGGCTCTCCGAAGAGCGGGTCCTGCATTACTGATGATGCTAATGACTTAAAGCACAAGCTAAGAGAATTAGAATCAGTAATGCTAGGTCCTGATTCTGATACTCTTGACAGCTATGACAGTGCCTTCCAAAATGTTACAAACAATATCTCACCTGAAATGGAAAGCTGGAGACAAATAGTTGAGGCCATCTCAAGTAGGGACTTGAAAAAGGTACTGATTTCATGTTCAAAAGCAGTAGCAGATAATGATCTGTTGATGTCACAATGGTTGATGGATGAACTTAGGCAAATGGTTTCAGTGTCTGGTGAGCCAATTCAAAGGTTGGGGGCATACATGTTGGAAGGGATAGTAGCGCGGTTCACCTCTTCAGGGAGTTCAATCTACAAAGCTTTGAGATGCAAGGAACCAGCAAGTTCTGAGCTTCTCTCTTACATGCATATACTCTATGAAGTTTGTCCGTACTTTAAGTTTGGTTACATGTCTGCAAATGGAGCTATTGCAGAAGCAATGAAGGATGAAAACCGAGTTCACATCATTGATTTCCAGATTGGTCAAGGAAGTCAGTGGATCACACTCATTCAAGCTTTTGCAGCTAGGCCTGGTGGACCACCCCACATCCGTATCACGGGCATCGATGATTCCACGTCAGCTTATGCCCGTGGAGGAGGATTAAGCATAGTGGGAAAGAGATTATCTAAGCTTGCTGAGTCATTTAAGGTTCCATTTGAATTTCATGCTGCAGATATCTCTGGTTGTGATATAAAAATGGAGACTCTCGGCGTTCGACATGGAGAGGCCCTTGCTGTAAATTTTGCATTTATGCTGCATCACATGCCTGATGAGAGTGTCAGTACTCAGAACCACAGGGACAGGCTACTGCATCTGGTGAAGAGTCTTTCTCCAAAAGTAGTGACACTGGTTGAGCAGGAATCTAACACTAATACTGCACCGTTTTTCCCTCGTTTCCTTGAAACTCTGGATTACTACACAGCTATGTTTGAGTCAATAGATGTGACACTTCCGAGGGAACATAAGGAGCGAATCAATGTTGAGCAGCATTGCCTAGCAAGGGATGTTGTTAACATCGTAGCTTGTGAGGGAGCTGAGAGAGTTGAACGGCATGAACTACTTGGGAAATGGAGGTCCAGGTTTGCAATGGCTGGTTTTACTCCATACCCTCTCAGCTCGTTAGTGAATGCGACCATCAAAACTCTGCTTGAGAACTACTCCAACAAGTATAGGCTTGAAGAAAGAGATGGAGCACTTTATCTTGGTTGGATGAACAGAGATTTGGTTGCTTCATGCGCATGGAAATGA 1647 0.4372 MQASEQHRSSGLSNGSRYQPIPQMEAYCLPQIRSLNSSNNQFHYDHVIQHMSSPISSGVYCTLESSSASANYKLHNSPSIASFSPNGSPISQPDSQSYLSDQHHSADNIYGSPKSGSCITDDANDLKHKLRELESVMLGPDSDTLDSYDSAFQNVTNNISPEMESWRQIVEAISSRDLKKVLISCSKAVADNDLLMSQWLMDELRQMVSVSGEPIQRLGAYMLEGIVARFTSSGSSIYKALRCKEPASSELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLSIVGKRLSKLAESFKVPFEFHAADISGCDIKMETLGVRHGEALAVNFAFMLHHMPDESVSTQNHRDRLLHLVKSLSPKVVTLVEQESNTNTAPFFPRFLETLDYYTAMFESIDVTLPREHKERINVEQHCLARDVVNIVACEGAERVERHELLGKWRSRFAMAGFTPYPLSSLVNATIKTLLENYSNKYRLEERDGALYLGWMNRDLVASCAWK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00386 548 Pfam GRAS domain family 178 548 IPR005202 -
Pte18g00386 548 ProSiteProfiles GRAS family profile. 169 548 IPR005202 -
Pte18g00386 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 144 542 IPR005202 -
Pte18g00386 548 MobiDBLite consensus disorder prediction 83 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00386 Pte-Chr18 8977624 8981257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00386 93 549 GRAS Transcription Factor Family AT5G48150 74.946 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte18g00386 GRAS 1.5e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00386 - - qsa:O6P43_014489 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g00386 18 8977624 8981257 Pte18g00386 18 8977624 8981257 RCT