Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00377 AACTCAGCAACCAAAACCCACAAGGGACCCAGTGGTTCAGGCACCTTAGCACCTTCAAAATCAACCCTTTACGTCTCAAACATTGATTACTCACTCACAAACTCTGATCTACATACCCTGTTCTCCACTTTCGGCAAAATTGCTCGAGTCACGATCCTCAAGGACCGAGTCACTCGTCAAAGCCGTGGTGTCGCTTTCATCCAATATGTCTCACGTGACGACGCTCACAAAGCCGAGCGTGAAATGAACCGTAAGATACTTAACGGCCGTACACTCACTGCTTCTATAGCATCTGACAATGGCCGGGCTGCTGAGTTCATTAGGAAAAGGGTTTATAAGGATAAGACTCGCTGTTATGAATGTGGGGTTTCTGGGCATTTGTCGTATGAGTGTCCGAAGAATCAGTTGGGGCCTAGAGAACGACCTGTGCAGAAGAGTGGAAGAAGGGGAGGAGTAAGAGTAGGTCTCGGTGGTGGTGGGTGGAGGAGGGTAGATGGGGAGGCAGAGGAAGGGGAGGAGGAGGAAGATGGTGGGGAGAGGTTTGAGGATGATAACTGGGCGTCTATTGTTGATGATGGAGCAGATGAGAGGTTGTTGAGAGGGAATGAGCAGGATGTTGTAGAGAAGAAGAAACGCAAGAGAGTTAGTTATTTCAGTGATGAGAGTGATGCTGAT 675 0.4874 NSATKTHKGPSGSGTLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGKIARVTILKDRVTRQSRGVAFIQYVSRDDAHKAEREMNRKILNGRTLTASIASDNGRAAEFIRKRVYKDKTRCYECGVSGHLSYECPKNQLGPRERPVQKSGRRGGVRVGLGGGGWRRVDGEAEEGEEEEDGGERFEDDNWASIVDDGADERLLRGNEQDVVEKKKRKRVSYFSDESDAD 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00377 225 SMART rrm2_1 22 95 IPR003954 GO:0003676
Pte18g00377 225 SMART rrm1_1 22 95 IPR000504 GO:0003723
Pte18g00377 225 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Pte18g00377 225 SMART c2hcfinal6 117 133 IPR001878 GO:0003676|GO:0008270
Pte18g00377 225 MobiDBLite consensus disorder prediction 134 187 - -
Pte18g00377 225 Gene3D - 1 109 IPR012677 -
Pte18g00377 225 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Pte18g00377 225 Gene3D - 110 144 - -
Pte18g00377 225 SUPERFAMILY RNA-binding domain, RBD 17 103 IPR035979 GO:0003676
Pte18g00377 225 ProSiteProfiles Zinc finger CCHC-type profile. 117 133 IPR001878 GO:0003676|GO:0008270
Pte18g00377 225 Pfam Zinc knuckle 118 133 IPR001878 GO:0003676|GO:0008270
Pte18g00377 225 SUPERFAMILY Retrovirus zinc finger-like domains 107 134 IPR036875 GO:0003676|GO:0008270
Pte18g00377 225 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 4 224 IPR044598 GO:0000398|GO:0005689
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00377 Pte-Chr18 8893430 8894104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00377 21 97 Eukaryotic Initiation Factors Gene Family AT1G49760 33.766 8.84e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00377 K13154 - qsa:O6P43_008664 324.709