Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00365 ATGGATTATCAAATGTGTCACAATCAAGCAATGGATCAAGAGGGACAGAAGCAGCCTCAACCAATGGACTCACAAGTGACCCTTTTGATTCGTCATCTTCCTGAGGCTATTACTCATGACACTCTCACTCAAATCTTGTCGCATTATGGAGCTTCCTCTGTCCGTCTTTGTTTCGGGGGAAGGTTGCGAAATTGTGCTTTTGTTGATTTCAGAAATGATATCTTGGCTTATCAAGCTCATTCCAAATTAAATGGGCTGAGGTTTCTTGGTAAAGTCCTCTCAGTGGAGAGAGCTGGCAAATCAACAGGCAACAATGAGGGACAAAGTGAACCTCAAATGTTAAAGGACTCAAAACCTGCCACGGCAACAGTGATGGACAATCTTGGTCTTAAAGTTCTCAATGAAGGTTCACAATCAGGGTGTTTGACTCCTAGGGAACCTGTTGCCCCAAGACTTGGTGTTGACTACCCATTTCCTCCTTACCTTGAGTATGCTTACCCTCCACCAGATGATAATATACTGGCCAACATTGTAAACACTCTACTTGCTGTTCCACGGTTTTACACTCAGGTGTTGCACTTGATGAACAAAATGAACCTTCCTGCTCCATTTCGCATGGCTCTGCCCACCCCACCTTTGCCGCCTTCCGCTCCAGAGCCAAAGCAACCAGTGCCTCCTTCACAACCTCCTCCCCCTCCTGCTTCTGTATCCTTTAAAGCTAAACACACAGATCTGTCCAGTGAAGAATCGGAAATGGAGTCTTCAGATGAGGAGGTTATTGGGGATGCTGATTCCAGTGCTGCTGCAATATTATTAAGGAAACCTGCAAGAAAACGTGTCAAGCATGAAGCTATTGTCGGCCCTGCAATTGATAAAGATGTTGCTCATGAAGCTGTTGGTCTCAAGCCATCCACGTTGGTCCCAAAAGAAATCCCAATGATAAAAAAGAGAAACCCTGTATTGCAGATTAAGATTGCTCCCAAAACAGTTCAAAACGAGCAGAAGGAATATAGCGTGCCAAAGGAAACAGAGCAGCCTGATACACAAGTTGCAGATCCGAGAACAATTTTGACTCCAAAAGAATTAGAGAGAGGAAAGTTGCCACTAGAGGAAATCTTATCTCTTCCAATGTTTAAGAACTATGCTGCTGGAAATCCTACTACGAAGCTGTACATCAAGAACTTGGCAAAAGATGTTACTGCTGATGACTTCTATTTTATCTTTGGGTCTATTTTCGGAAATATTGATGCTGCTAGAAGTGGTCTAAATGTGAACCTGATGCAGGAAGGAAGGATGAGGGGGCAAGCTTTTGTGACATTTCCTTCAGCAGAACTTGCCCATCACGCATTGAATCTAGTTAATGGATATGTGTTGAAAGGCAAGCCCATGATTATTCAGTTCGGACGCAAATAA 1413 0.4367 MDYQMCHNQAMDQEGQKQPQPMDSQVTLLIRHLPEAITHDTLTQILSHYGASSVRLCFGGRLRNCAFVDFRNDILAYQAHSKLNGLRFLGKVLSVERAGKSTGNNEGQSEPQMLKDSKPATATVMDNLGLKVLNEGSQSGCLTPREPVAPRLGVDYPFPPYLEYAYPPPDDNILANIVNTLLAVPRFYTQVLHLMNKMNLPAPFRMALPTPPLPPSAPEPKQPVPPSQPPPPPASVSFKAKHTDLSSEESEMESSDEEVIGDADSSAAAILLRKPARKRVKHEAIVGPAIDKDVAHEAVGLKPSTLVPKEIPMIKKRNPVLQIKIAPKTVQNEQKEYSVPKETEQPDTQVADPRTILTPKELERGKLPLEEILSLPMFKNYAAGNPTTKLYIKNLAKDVTADDFYFIFGSIFGNIDAARSGLNVNLMQEGRMRGQAFVTFPSAELAHHALNLVNGYVLKGKPMIIQFGRK* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00365 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 93 IPR000504 GO:0003723
Pte18g00365 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 390 462 IPR000504 GO:0003723
Pte18g00365 470 MobiDBLite consensus disorder prediction 1 22 - -
Pte18g00365 470 Gene3D - 2 112 IPR012677 -
Pte18g00365 470 PANTHER UNCHARACTERIZED 22 470 IPR045164 -
Pte18g00365 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 100 IPR000504 GO:0003723
Pte18g00365 470 Gene3D - 382 470 IPR012677 -
Pte18g00365 470 MobiDBLite consensus disorder prediction 99 116 - -
Pte18g00365 470 MobiDBLite consensus disorder prediction 211 236 - -
Pte18g00365 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 388 470 IPR000504 GO:0003723
Pte18g00365 470 MobiDBLite consensus disorder prediction 211 261 - -
Pte18g00365 470 SMART rrm1_1 27 96 IPR000504 GO:0003723
Pte18g00365 470 SMART rrm1_1 389 466 IPR000504 GO:0003723
Pte18g00365 470 MobiDBLite consensus disorder prediction 99 118 - -
Pte18g00365 470 CDD RRM2_RBM40_like 387 468 - -
Pte18g00365 470 SUPERFAMILY RNA-binding domain, RBD 26 468 IPR035979 GO:0003676
Pte18g00365 470 FunFam U11/U12 small nuclear ribonucleoprotein 65 kDa protein 383 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00365 Pte-Chr18 8679493 8685634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00365 388 466 Eukaryotic Initiation Factors Gene Family AT3G16380 31.646 6.70e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00365 K13157 - qsa:O6P43_009802 556.599