Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00341 ATGGAAGTTCCAAAGGATGGTATAGTGAGAGGTAAAAGGAAGTCAGCGAGAGGACACCATAAATATGTTGGGGTTAGGCAAAGACCATCTGGGAGATGGGTTGCAGAGATCAAAGACTCATTGCAGAAGGTAAGGCTTTGGCTTGGAACATTTGACACTGCAGAAGATGCTGCTCGTGCTTACGATGAAGCAGCTCGAGCTTTGCGTGGTGCGAATGCTCGTACGAACTTCGAGTCGACGGAATCAGCGAATACAAATCGTTCCAGCTACATGCCTGAGAAGCTTGAGCCGTTTTCGTTTGAGGATGTTTGTGCTGATGGGACTGAAGGGGAAGGTCTCATTGGTGCACTCAAAGCCAAGATTTTTGAAGGGAGAGGAGCAAAGGGTGTTGGTGCACCGTCTCTCAGTTTAGGGTTGCCTCCCAAATCAACTGCAACAGGTCCAAGTAGCTCAACTCAGAAGACTTGTGGTAAGAGTGATCATTCAGCTGCTGCTGCTTCTGTCCCTGAGAAAACAGTTGGGATCAGAAAAATACAGGATTTCAATCACAACAATTCAACAAATATGAGTCTTTCTACGCCTAGCCTCATTGTAAATCAAGATAATCATCAATCTGTAGATGCTGGTAATGTTGGATTCAGTTGGCTGCCACCAAGTCAACCGGTCTCCTCAGCAGCAACAGCTACAACATCGACAACCATGATATGGTCTAATGGATCTGCAGCTTATCATGAATTACCTTGGTCTACACAGGTGAACCGTGTTCCTGCAGAAAATAGCATGCTTGCTTCAATAAATGCTTCTGCATCTACATGGACACTTTCTGGGTATTATCCTGATTCGACCTTGAATTTGAGTTATGCAGATACTGTGCCAACAACTACTAGGCTTACAGACGAACCGTATTGTTGGCCCTCTCATGAGCAAACTCTTGTGCAATGTGACAATGGTGGTTGGATTACCTCGCATAGTCCTTGGGATCCTATCTTCTATGTTACCTCCCAGCTTGGGTGA 1014 0.4556 MEVPKDGIVRGKRKSARGHHKYVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDEAARALRGANARTNFESTESANTNRSSYMPEKLEPFSFEDVCADGTEGEGLIGALKAKIFEGRGAKGVGAPSLSLGLPPKSTATGPSSSTQKTCGKSDHSAAAASVPEKTVGIRKIQDFNHNNSTNMSLSTPSLIVNQDNHQSVDAGNVGFSWLPPSQPVSSAATATTSTTMIWSNGSAAYHELPWSTQVNRVPAENSMLASINASASTWTLSGYYPDSTLNLSYADTVPTTTRLTDEPYCWPSHEQTLVQCDNGGWITSHSPWDPIFYVTSQLG* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00341 337 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Pte18g00341 337 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Pte18g00341 337 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Pte18g00341 337 MobiDBLite consensus disorder prediction 1 20 - -
Pte18g00341 337 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Pte18g00341 337 MobiDBLite consensus disorder prediction 132 169 - -
Pte18g00341 337 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Pte18g00341 337 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 219 - -
Pte18g00341 337 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Pte18g00341 337 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Pte18g00341 337 FunFam ethylene-responsive transcription factor RAP2-11 20 79 - -
Pte18g00341 337 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Pte18g00341 337 Coils Coil 54 74 - -
Pte18g00341 337 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00341 Pte-Chr18 7862898 7863911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00341 10 77 AP2-EREBP Transcription Factor Family AT5G19790 70.588 2.47e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte18g00341 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00341 - - tcc:18605918 237.654