LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte18g00337	ATGCCCCAGGAGATGTCTTCTGTTGTCAATGGAAATGATCAGCTCACTGGGCATATTATATCTACAACAATAGGAGGTAAAAATGGAGAGCCCAAGCAGACTATTAGTTACATGGCAGAGCGTGTTGTTGGAACAGGATCCTTTGGAATTGTCTTCCAGGCAAAATGCTTGGAAACTGGGGAGACTGTGGCCATAAAGAAGGTATTGCAGGACAAAAGGTATAAGAATCGTGAGTTGCAGCTTCTGCGCATGATGGATCATCCTAATGTGGTCTCTTTGAAGCATTGTTTCTTTTCCACGACAAACAGAGATGAACTTTTCCTCAATTTGGTTATGGAATATGTACCAGAGTCTATGTATGGAGTCTTGAAGCATTACAACAATTCTAATCAGAGAATGCCACTTATTTATGTAAAGCTTTACACGTACCAGATCTTTAGGGGATTGGCATATATCCATACTGTTCCCGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATCTTCTGGTTGACCCTCTTACACATCAGGTGAAGCTTTGTGATTTTGGAAGTGCAAAAGTGCTGGTGAAAGGTGAAGCTAATATATCCTACATATGTTCCCGTTTCTATCGAGCTCCAGAACTTATATTTGGTGCGACTGAGTATACCACCTCTATTGATATTTGGTCCGCTGGTTGTGTTCTTGCTGAACTTCTACTGGGCCAGCCATTATTCCCTGGAGAAAATGCTGTGGACCAGCTTGTCGAGATTATAAAGGTTCTTGGCACACCCACTAGAGAGGAAATCCGCTGTATGAATCCAAATTATAATGACTTCCGGTTTCCACAGATAAAAGCACACCCATGGCATAAGATTTTCCACAAAAGAATGCCTCCGGAAGCAATCGATCTTGCCTCAAGGCTCCTTCAGTACTCCCCAAGTCTTAGGTGCACAGCGTTGGAAGCTTGTGCACATCCTTTCTATGCTGAACTACGAGAACCAAATGCTCGCTTACCGAATGGTCGCCCATTACCACCATTATTTAATTTCAAACAGGAGATTGCTAATGCATCTTCAGAGCTTGTTAATAAGTTAATACCGGATCATGTGAAGCGTCAAGTGGGTCTAAACGTGCACTTGGCCAGTACATAA	1131	0.4271	MPQEMSSVVNGNDQLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQLLRMMDHPNVVSLKHCFFSTTNRDELFLNLVMEYVPESMYGVLKHYNNSNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDLKPQNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYNDFRFPQIKAHPWHKIFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFYAELREPNARLPNGRPLPPLFNFKQEIANASSELVNKLIPDHVKRQVGLNVHLAST*	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte18g00337	376	CDD	STKc_GSK3	32	324	IPR039192	-
	Pte18g00337	376	FunFam	Glycogen synthase kinase-3 beta	21	116	-	-
	Pte18g00337	376	FunFam	Shaggy-related protein kinase kappa	117	364	-	-
	Pte18g00337	376	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	158	170	IPR008271	GO:0004672\|GO:0006468
	Pte18g00337	376	ProSitePatterns	Protein kinases ATP-binding region signature.	43	67	IPR017441	GO:0005524
	Pte18g00337	376	Gene3D	Phosphorylase Kinase; domain 1	22	116	-	-
	Pte18g00337	376	SMART	serkin_6	37	321	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte18g00337	376	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	6	366	-	-
	Pte18g00337	376	Gene3D	Transferase(Phosphotransferase) domain 1	117	364	-	-
	Pte18g00337	376	ProSiteProfiles	Protein kinase domain profile.	37	321	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte18g00337	376	Pfam	Protein kinase domain	37	320	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte18g00337	376	SUPERFAMILY	Protein kinase-like (PK-like)	36	345	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte18g00337	Pte-Chr18	7696782	7699987	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte18g00337	41	359	MAP Kinase Gene Family	AT3G59790	35.152	1.13e-57	191

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Pte18g00337		Pkinase	2.6e-63	CL0016