Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00332 ATGGATCAGGATGGCAAGCGAGGTGAAGATGTTGTTTTGAGCGAGGAAGATGGAATTTTAAGTAAAGAAGTTAATGGGGTTGCTGTTGGTGCTGCTGTTTTGAGCGCTTCAGTTGGGAAAGCTGGTGCGGGTGGTGAAAATAAAGTTTTGGTTGCAGAGGGTATTGATAATTTTATCAAGGAAGTTAATGGGGCTGCTGTTGATGCTAACATTGTGAGTGCTTCGGTTGAGAAAGCTGGTGTTAGTGGTGAAAGTAAGATATCGGTGGCAGAGGATGGTGAGTTAGATTTAGAAGACGGACAAAAGGATGGAAACACAAAGATTGTGGTTCTAGGTATCCATGAGCAGCAAGGGAGCTATGAAGTGTTGAATGAGCTTGATCAGGAAACAAGTGCCAGGAAATCTGTTAATGGGGTTGAACATGATACTGGGGTCGTAATAAGATCAGTTCAGGCTCAGAGTCAGGCTGTCGGTGTGAATGAAAGAAATAAGACGCCCGATTTCAAGGATGGAAAATTAGCATTGAATAAAGCGTTGGCTCAAGAACCAAAGAAAATGGTCTCTGAAATACAGAAGGATTCATGTGTGATTGATATAAAGTGTGGAAGTGATAGATCAATTGGTGAAGATGGAGAAAGTGTTTGTAGGATTTGCCATCTGGGTTCTGGCCAATCAGCGGAGACAGCTGGCAGTGATGCTACTATTACTACAAGTGGAGATTTGATTCATCTTGGATGTGTGTGTAAAGACGAGCTAGGTATAGCTCATAGTCAATGTGCCGAGGCATGGTTTAAGCTAAAAGGAAACAGATTGTGTGAAATATGCGGTGAGACAGCAATAAATGTTGCAGGTATGGGAGATGAGAGGTTTATGGAAGAGTGGCATGAAAGGAGACTGAGTGGCAGGAGCAGAAACCCATCAGGAAGAGTTGATAGTTGGTGGAGAGGACAGCCATTTTGTAACTTTCTGATGGCTTGCCTGGTAATAGCTTTTGTGCTTCCATGGTTTTTCCGTGTGAATATATTCTAG 1029 0.4286 MDQDGKRGEDVVLSEEDGILSKEVNGVAVGAAVLSASVGKAGAGGENKVLVAEGIDNFIKEVNGAAVDANIVSASVEKAGVSGESKISVAEDGELDLEDGQKDGNTKIVVLGIHEQQGSYEVLNELDQETSARKSVNGVEHDTGVVIRSVQAQSQAVGVNERNKTPDFKDGKLALNKALAQEPKKMVSEIQKDSCVIDIKCGSDRSIGEDGESVCRICHLGSGQSAETAGSDATITTSGDLIHLGCVCKDELGIAHSQCAEAWFKLKGNRLCEICGETAINVAGMGDERFMEEWHERRLSGRSRNPSGRVDSWWRGQPFCNFLMACLVIAFVLPWFFRVNIF* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00332 342 Pfam RING-variant domain 215 275 IPR011016 GO:0008270
Pte18g00332 342 PANTHER ZINC FINGER, RING-CH-TYPE 127 342 - -
Pte18g00332 342 ProSiteProfiles Zinc finger RING-CH-type profile. 207 282 IPR011016 GO:0008270
Pte18g00332 342 SMART ringv_2 214 276 IPR011016 GO:0008270
Pte18g00332 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 284 IPR013083 -
Pte18g00332 342 SUPERFAMILY RING/U-box 211 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00332 Pte-Chr18 7585790 7589786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00332 215 341 C3H Transcription Factor Family AT5G05830 43.284 3.21e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00332 - - qsu:111996639 268.47