Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00296 ATGAGTTTTCTTTACAAAACAGTGACTGCAGCCAAAAATATTTTGTTACTACAACTTGTGTTTATCATTGTAATCTTGCCAAGGGGCTTGAACTCTTCTGATCCTCCTGGAGGATCGGCGCTTCCAACTGAAACATCTCCTCTCCGGGTAGGAATTCCTGTTGAACCTTCATTTGAAAATTTCGTGAAGGAGATGGCACCACAAAAGTATGAAGGTTTCTGTATAGATATCTTCAATGGAGCCCAGGAGATATTGAGTAACAAATATTCTGGGTTACCATACAAATTCTACCCCATTTCAGCATCTGGTAAAGTCCAGCTTGATTATGATGATATGCTTCATTATGTCATCAACAAGACTTACGATGTGATAGCTGGGGATATCACAATACTTGCCAATAGATCAGAACTTGTGGAGTTCACGCAGCCATATACTGAGTCAGGGTTGTCGTTGATACTTCCAGCTGAGCCTGAAGGATCAGTATGGTTGTTCCTGAAGCCATTTTCATGGCCGATGTGGATAACAACTGTAAGCATCCTTATCTACACAACCTTTATCATTTGGTTCTTGGAGCATCGTGCAAATCCAGAATTTGGTGGACCACGGAAAAGCCAGCTTAGCACCGCACTTTGGTTCTCTTTCTCTTCACTGTTCTTTGCTCATAAGGAGAAGATCAGTAGCGACTTTACTAAAATTGTGGTTGTAATGTGGTTATTTCTGGTGTTTGTTCTAACCTCTAGCTACACTGCAAGCCTGTCTTCCATGCTGACTGTTCAGAAAATGAAAGCTCCTAGAGATATTGGGTGGCTGAAGCGCAACAACTTGTCAGTTGGCTACGATGAAAGGAGTGACTTCGTCAGAAAATACATCAAGGAAGAACTTGGATTGAATTTGGAAATCGTTCAGCTGCGAGGTGAAGAAGATTACCGAAAGAAATTCAAGAACAAGAGAATCTCGGGTCTATTTCTTGAGCTTCCATATGAGAAGGCTTTTCTTGCCAAGTACTGCAAAGACTACACTAAAATAACATTGGGCTTCAGATTTGGTGGACTCGGATTTGCATTCCAGAAAGACTCTCCCTTGGCCAGGGAGTTCTCTTGTGCCATTTTAACATTATCAGAATCCGGAGCACTTAAAAGTATGCAAGAGAAATGGTTGGCCCCAACCAAACAATGCTCAACTGACTCATCTGACTCTTCAACTGAAGATAGCGATCGGAGCTTGACTCTGCTGAATTTCTGGGTTCTATATGTCATAAGTGGTGCCACTTCCACCTTGTGTCTAATACTGTCATTATGTAAGAAGTATAGGCATCATGAAGAATCTGCGGAAACTGTGGACAATATTGATGTTGCCACAACTGATAATAACATGTGGAAGAAGGCTATTACAATCACAAGGAGCCTTGGTAATGGAGATTTCAGTGGCCTAGAAAAAGCTCCAACATTTCGCAAATGGCAATCTTCGAGATGGGAAAGGCTGCACGATTCTGATCCCCAGCACAATCATCTGCACCACGAAATACAAATGGCATAG 1536 0.4193 MSFLYKTVTAAKNILLLQLVFIIVILPRGLNSSDPPGGSALPTETSPLRVGIPVEPSFENFVKEMAPQKYEGFCIDIFNGAQEILSNKYSGLPYKFYPISASGKVQLDYDDMLHYVINKTYDVIAGDITILANRSELVEFTQPYTESGLSLILPAEPEGSVWLFLKPFSWPMWITTVSILIYTTFIIWFLEHRANPEFGGPRKSQLSTALWFSFSSLFFAHKEKISSDFTKIVVVMWLFLVFVLTSSYTASLSSMLTVQKMKAPRDIGWLKRNNLSVGYDERSDFVRKYIKEELGLNLEIVQLRGEEDYRKKFKNKRISGLFLELPYEKAFLAKYCKDYTKITLGFRFGGLGFAFQKDSPLAREFSCAILTLSESGALKSMQEKWLAPTKQCSTDSSDSSTEDSDRSLTLLNFWVLYVISGATSTLCLILSLCKKYRHHEESAETVDNIDVATTDNNMWKKAITITRSLGNGDFSGLEKAPTFRKWQSSRWERLHDSDPQHNHLHHEIQMA* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00296 511 Pfam Bacterial extracellular solute-binding proteins, family 3 60 386 IPR001638 -
Pte18g00296 511 FunFam Glutamate receptor 352 385 - -
Pte18g00296 511 SUPERFAMILY Periplasmic binding protein-like II 25 386 - -
Pte18g00296 511 Gene3D - 43 160 - -
Pte18g00296 511 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 454 IPR015683 -
Pte18g00296 511 Gene3D - 161 280 - -
Pte18g00296 511 Pfam Ligand-gated ion channel 387 421 IPR001320 GO:0015276|GO:0016020
Pte18g00296 511 FunFam Glutamate receptor 161 291 - -
Pte18g00296 511 Gene3D - 284 394 - -
Pte18g00296 511 SMART GluR_14 49 388 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00296 Pte-Chr18 5725840 5728003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00296 36 438 Ion Channels AT1G42540 36.408 1.55e-79 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00296 - - gmx:112997619 509.99