LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte18g00292	ATGGATAGAAGTACTCAAGTGGTTCTACTAGTTCTTTTCTTCAAGTTTCTGGCCGTTGCAGCACAGACCACAGATCCTCAAGACTTTGGTGCTTTAAGGGGTCTAATTGATAATTGGCAAAACACACCACCAAATTGGGTGGGAACAGATCCTTGTGGAACTGGTTGGGCAGGAATCAGCTGCACCAATTCAAGGGTGACGTCCATAACACTGCCAAACATGGACTTGGAGGGCAAAATAACAGCAGATATCCTGAAAATAACTGAATTACTAACTCTTGATCTTTCTAACAATCAAGGCCTAGGAGGAACAATTCCACAAGGAATAGGAAGTTTGAAGAAGCTAACCACCTTAATTCTGGTCGGTTGCAATTTCGTCGGCCCCATTCCAGATTCAATTGGATCTTTGAAACAGATGACATTTCTAGCACTTAACTCCAACAAATTCAGTGGACCGATACCTCCAAGTATTGGCAATCTATTAAATCTTACATGGCTAGATCTTTCTGATAATGAACTTGAGGGGCCAATCCCAGTTTCTGATGAAAACTCACCTGGTGTAGATATGCTGGTGAAGACTCTTCATTTGCTCCTGAATAACAACCAGCTAAATGGATCCATTCCCTTGTCTCTAGGAACAGTGAAATCCTTGCAAGTGGTGCGTTTGGATGGGAACCAATTGAGTGGAGTAGTGCCTTTAAGTATCAGCGAACTTGCAAACCTCAATGAACTTCATTTATCAAACAACAAGCTCAATGGATCTCTGCCTGACCTAAGTGGCATGAATCAGCTCAACTATGTAATAATGCAGAACACGGGACTCCAAGGGGAAATTCCTGTTTCCATATTCAATCTCACAAATTTAGAGTCTGTACTGTTTGGGAATCCAATATGTTTGGAAACAGGAGCATCATCACAAAGTTACTGCCAGGACACCAAAATCACTTACACATACACAACACCAGCAAACTGTGGACCAGTTTCCTGCAATTCCAACCAGATTTCGAGTCCTAACTGTAAATGTGCATATCCATTCACAGGGACTATTTTCTTCAGAGCAATTGGTTTCTCAAACTATGATAACTCAACTTACTATCTGGCTCTTCAGCAGTCTCTCATGACTGCCTTTCAGTCCCAAAATTTACCTGTGGATTCAGTTTCTATCAGCAATCCGTTTACCAATGATGTCGGCTACTTTGCATTGAGCCTCGCAATTTTCCCTTCACAACAAGATCGGTTTAATAGAACCACAGTAATAAGTCTTGGTTCTGTTCTCAACAGCCAGATTGTCAAACCTCCAAAATTTTTGAGACCTTACTATTTCATTGCCAACAATTATGAATACTATGCAGGAGAATCCTCTGTGTCAAAGAAGTCATCAAACAAGGGAATTATAGCTGGTACAGTATCTGGAATTGCTGTCAGTCTGCTATTAGCAACTTTTTTTGGGGTATACGCATTCCAAAAGAAGAAGAGAGCAGAAAAATCAATGGAAATGAACCCTTTTGCACACTGGAAAATGGACAAGAACAATGGGAATGCTCCTCAGTTGAAAGCAGCAAGATGGTTTTCATTTGAAGAGCTTAGCAAATACACCAACAATTTTTCAGATGCAAATGATGTTGGAGCTGGGGGATATGGCAAGGTTTATCGAGGTACACTTCCCTCTGGCGAAGTAGTTGCCATTAAAAGGGCCAGGCAAGAATCCATGCAAGGTGCGCTGGAGTTTAAAACTGAGATTGAACTTCTATCAAGAGTCCACCATAAGAATCTAGTTGGTCTTGTGGGTTTCTGCTTTGAGAAAGGTGAACAGATTCTGGTATATGAGTACATCTCTAAAGGAACTCTAATGGACAGTCTTTTAGGAAAATCTGCGACGAGATTGGATTGGAAGAAGAGGTTAAGTGTGACATTGGGGGCTGCGAGAGGACTGTCTTATCTTCATGAACTTGCCAACCCACCTATTATACATAGAGACGTCAAATCAGGCAATATCCTACTTGATGAGCAGCTAAATGCGAAAGTTGCAGATTTCGGATTGTCTAAGCCTTTTGCTGATGCTGATAGAACTCACATCACCACTCAAGTTAAAGGAACAATGGGATACTTGGATCCTGAATATTACATGACGACACAGTTGACTGAGAAGAGTGATGTTTATAGCTTTGGAGTGGTGATGCTTGAGCTGATTACAGCAAGAAAGCCAATAGAGCATGGAACATATATTGTGAGGGAGATCTTAAAGGTGCTGGACAGGTCAAAAAAGCTGTACAACCTTCATGACATTATTGATCCATACATAAGAGGAACAGACCTCAAAGGCTTGGAGAAGTTCTTTGATCTTGCTATGAGGTGTGTCAACGAATCGGGAGACAAGAGACCTACAATGGCTGAGGTGGTAAAAGAGATTGAGGATATAATGCAGCTCGTGGGCTTGTACCCCAGTACTGAATCATCATCATCCATTACAAAGCCTAAAACTGTAGCAACTCATGAAAGTATCCATGATTCTGTGGAGGATTTCAGTTATAGTGGGGGTTTCCCATCCATGAAGATAGAACCCCTCTGA	2568	0.4151	MDRSTQVVLLVLFFKFLAVAAQTTDPQDFGALRGLIDNWQNTPPNWVGTDPCGTGWAGISCTNSRVTSITLPNMDLEGKITADILKITELLTLDLSNNQGLGGTIPQGIGSLKKLTTLILVGCNFVGPIPDSIGSLKQMTFLALNSNKFSGPIPPSIGNLLNLTWLDLSDNELEGPIPVSDENSPGVDMLVKTLHLLLNNNQLNGSIPLSLGTVKSLQVVRLDGNQLSGVVPLSISELANLNELHLSNNKLNGSLPDLSGMNQLNYVIMQNTGLQGEIPVSIFNLTNLESVLFGNPICLETGASSQSYCQDTKITYTYTTPANCGPVSCNSNQISSPNCKCAYPFTGTIFFRAIGFSNYDNSTYYLALQQSLMTAFQSQNLPVDSVSISNPFTNDVGYFALSLAIFPSQQDRFNRTTVISLGSVLNSQIVKPPKFLRPYYFIANNYEYYAGESSVSKKSSNKGIIAGTVSGIAVSLLLATFFGVYAFQKKKRAEKSMEMNPFAHWKMDKNNGNAPQLKAARWFSFEELSKYTNNFSDANDVGAGGYGKVYRGTLPSGEVVAIKRARQESMQGALEFKTEIELLSRVHHKNLVGLVGFCFEKGEQILVYEYISKGTLMDSLLGKSATRLDWKKRLSVTLGAARGLSYLHELANPPIIHRDVKSGNILLDEQLNAKVADFGLSKPFADADRTHITTQVKGTMGYLDPEYYMTTQLTEKSDVYSFGVVMLELITARKPIEHGTYIVREILKVLDRSKKLYNLHDIIDPYIRGTDLKGLEKFFDLAMRCVNESGDKRPTMAEVVKEIEDIMQLVGLYPSTESSSSITKPKTVATHESIHDSVEDFSYSGGFPSMKIEPL*	856

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte18g00292	855	CDD	STKc_IRAK	541	806	-	-
	Pte18g00292	855	Gene3D	Phosphorylase Kinase; domain 1	505	610	-	-
	Pte18g00292	855	SUPERFAMILY	Protein kinase-like (PK-like)	521	823	IPR011009	-
	Pte18g00292	855	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	655	667	IPR008271	GO:0004672\|GO:0006468
	Pte18g00292	855	ProSiteProfiles	Leucine-rich repeat profile.	240	262	IPR001611	GO:0005515
	Pte18g00292	855	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	14	831	-	-
	Pte18g00292	855	ProSiteProfiles	Protein kinase domain profile.	535	807	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte18g00292	855	PRINTS	Leucine-rich repeat signature	163	176	-	-
	Pte18g00292	855	PRINTS	Leucine-rich repeat signature	238	251	-	-
	Pte18g00292	855	Gene3D	Ribonuclease Inhibitor	186	297	IPR032675	-
	Pte18g00292	855	ProSitePatterns	Protein kinases ATP-binding region signature.	541	563	IPR017441	GO:0005524
	Pte18g00292	855	FunFam	Leucine-rich repeat family protein	27	182	-	-
	Pte18g00292	855	Gene3D	Transferase(Phosphotransferase) domain 1	611	814	-	-
	Pte18g00292	855	FunFam	Leucine-rich repeat protein kinase family protein	502	610	-	-
	Pte18g00292	855	Gene3D	Ribonuclease Inhibitor	17	185	IPR032675	-
	Pte18g00292	855	Pfam	Protein tyrosine and serine/threonine kinase	539	802	IPR001245	GO:0004672\|GO:0006468
	Pte18g00292	855	SMART	serkin_6	535	810	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte18g00292	855	SUPERFAMILY	L domain-like	31	296	-	-
	Pte18g00292	855	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	611	819	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte18g00292	Pte-Chr18	5438759	5444201	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte18g00292	3	854	Receptor kinase-like Gene Family	AT5G49760	47.534	0.0	792

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Pte18g00292		PK_Tyr_Ser-Thr	8.1e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte18g00292	-		-	gmx:100786172	988.023