Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00279 ATGCCAGCACCAAAGCGTACGCAAGATACTCAGGAAGACGATCCTCTTGTTGAACTTGATTACGATCACAACAACAATAATCAGGCAGATGACGAAGAGGATTCCGATCGAAGCCCGTGGTCTATTCATGGAGAAAAAGACGAAAATGTTACTATCATGTTGTCAGACATACGGAGGATAGTTCAATGTCCAATCTGCCTAGGGATCATCCGCAAAACAAGAACAGTTATGGAATGCTTGCATCGTTTTTGCAGAGAGTGCATTGACAAATCTATGCGCCTTGGAAATAATGAATGCCCTGCTTGCCGCACACATTGTGCTAGTCGACGCTCTCTAAGAGATGATCCAAGATATGATGCCTTCATTGCTTCTCTCTATCCAGATATTGACAAATATGAAGAGGAGGAATTGGCTTTCCAAGAAGAGGAGAAAGCTCGCAATATACAGATCCAAGCCTCGATTGCACAGACTCTGCAACGACAGACAGAAGCTTTAAGTCGAAAACGCACAGCTAAAGCAACAGCTGCTGCTTTTAGAAAAAGATCTCTGGATAGTTCCAGAAATTTGCATCCAAGGAGAAGAAGGAATTCCTTTATCTCAGGTGATTTTCTTCAAGACTCTGATGAAAATGAAGACACAAATGGTAATGAGGGGGGCAAGGATTCATCTTCTGATGAGAGGACAGAGAACAAGCAGAAAAAATGTAAGAGATTGGGAGGAGTGCGTTTGTCCCAATCCTCTGGAACTGCAGGTGTAGATGGCGGCGAGGATGAAAATGATCCTGAATCAAATAAAGAATTCATTGTTGCATCACCTGCGCTTGTAGCCAGTTCTGATCGACTTTCCTGGGGAAAAGGCGGCATCCGAAGCCGTGGAAATGGAAAGAATTCTAGGAACAGTCGTATCTCGAAGTTGGTTGATCATCTTCGTAATTCTGAGAGGAATGATGATGAGTGGGATATCCACGTTACATTGGTTTCCTTCGACAAGCAAAGCATACCCAGTTTGAAGCAGCCATACCTCTGCTGCAGGCCTACTTTGTCAGTCAGACATCTTCGCGAGTATATTGCCAATCAAACAGCACGAGAGGCTAGTGAAGTTGAAATTTGCTTGGTTGAAGAACTGGCTGCAGACGTTGGCTACTTGAAATCTGCGGAAGAGCTAACATTTGAGACCAGCTTGACAGAACCAGGCACACACAAGTTGGCAGTGCTGAGAGAGCAAGACACTTTGGCAGAAGTGATTACCGGAAATTCATTCCATGCCAATCTGGTACTCGTATACAGGAAGAAGTTGGAGAACTGTCAGTAA 1311 0.4424 MPAPKRTQDTQEDDPLVELDYDHNNNNQADDEEDSDRSPWSIHGEKDENVTIMLSDIRRIVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPRYDAFIASLYPDIDKYEEEELAFQEEEKARNIQIQASIAQTLQRQTEALSRKRTAKATAAAFRKRSLDSSRNLHPRRRRNSFISGDFLQDSDENEDTNGNEGGKDSSSDERTENKQKKCKRLGGVRLSQSSGTAGVDGGEDENDPESNKEFIVASPALVASSDRLSWGKGGIRSRGNGKNSRNSRISKLVDHLRNSERNDDEWDIHVTLVSFDKQSIPSLKQPYLCCRPTLSVRHLREYIANQTAREASEVEICLVEELAADVGYLKSAEELTFETSLTEPGTHKLAVLREQDTLAEVITGNSFHANLVLVYRKKLENCQ* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00279 436 MobiDBLite consensus disorder prediction 213 236 - -
Pte18g00279 436 SMART ring_2 63 102 IPR001841 -
Pte18g00279 436 PANTHER OS11G0578200 PROTEIN 20 432 IPR044592 -
Pte18g00279 436 MobiDBLite consensus disorder prediction 7 43 - -
Pte18g00279 436 ProSiteProfiles Zinc finger RING-type profile. 63 103 IPR001841 -
Pte18g00279 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 132 IPR013083 -
Pte18g00279 436 MobiDBLite consensus disorder prediction 1 43 - -
Pte18g00279 436 MobiDBLite consensus disorder prediction 166 263 - -
Pte18g00279 436 SUPERFAMILY RING/U-box 46 134 - -
Pte18g00279 436 MobiDBLite consensus disorder prediction 183 199 - -
Pte18g00279 436 ProSitePatterns Zinc finger RING-type signature. 79 88 IPR017907 -
Pte18g00279 436 Pfam Zinc finger, C3HC4 type (RING finger) 62 102 - -
Pte18g00279 436 CDD RING-HC_RING1-like 60 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00279 Pte-Chr18 4857432 4862934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00279 52 105 C3H Transcription Factor Family AT3G23060 34.545 2.67e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00279 K10695 - qsa:O6P43_031861 508.834