Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00275 ATGGACAAAAGCAAAGCTGAGGGGAAAAGAGAGTACAGGGAGGAAGATGGTGAAGAAGATGAAGATGATGATTTCAGTGACCTGGGGTTTTTGGAGGATGAAAGGAAGAGGAGAGTGATCATGACTGATCACCTGATCCAGAGTAAGAAAGGAGGGTCCAGAGGTGGGGGTTGTTCAGCAGCACGTCCTACTTGTCAAGTTGACTACTGTAATGCTGATCTAACTGATGCCAAGCACTACCATAAGCGTCATAAGGTGTGTGAGTCTCATGCTAAAGCTCCTTCTGTCTCCATTGCAGGCCTGCAACAACGTTTTTGCCAGCAATGTAGCAGATTCCATGATCTAGCAGAGTTCGATGACAACAAAAGGAGCTGTAGAAGGCGTTTGGCAGGACATAACGAACGCCGGAGGAAAAACTCGACATCTGAATATCATGGAGACAGCCATGGGTGA 453 0.4702 MDKSKAEGKREYREEDGEEDEDDDFSDLGFLEDERKRRVIMTDHLIQSKKGGSRGGGCSAARPTCQVDYCNADLTDAKHYHKRHKVCESHAKAPSVSIAGLQQRFCQQCSRFHDLAEFDDNKRSCRRRLAGHNERRRKNSTSEYHGDSHG* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00275 150 FunFam Squamosa promoter-binding-like protein 14 57 126 - -
Pte18g00275 150 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 140 IPR044817 GO:0003677
Pte18g00275 150 PIRSF SBP 1 150 IPR017238 GO:0003677|GO:0003700|GO:0009908
Pte18g00275 150 SUPERFAMILY SBT domain 63 143 IPR036893 GO:0003677|GO:0005634
Pte18g00275 150 MobiDBLite consensus disorder prediction 14 28 - -
Pte18g00275 150 MobiDBLite consensus disorder prediction 1 28 - -
Pte18g00275 150 Pfam SBP domain 65 138 IPR004333 GO:0003677
Pte18g00275 150 Gene3D - 60 126 IPR036893 GO:0003677|GO:0005634
Pte18g00275 150 MobiDBLite consensus disorder prediction 135 150 - -
Pte18g00275 150 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Pte18g00275 150 MobiDBLite consensus disorder prediction 126 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00275 Pte-Chr18 4670088 4671675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00275 56 141 SBP-box Gene Family AT2G33810 68.605 1.97e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte18g00275 SBP 5.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00275 - - qsa:O6P43_031859 161.384