Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00265 ATGGTGGGTAGGTTCGGTTCACCGTCATCAGAGCAAGAAATTTCGATGAATGTCACCAACACACCATCGCAGGACCTCGCCATTACCAACCTTGCATTCTGCTCTGTTTCTGATCTTCATGGTTTCGGTATACCTGGCTTCAAAGACCTTTACCTTGCTAATGTCGGCGACTTCTTGGTTCTCTCACTTGCATATCCTTCTGATCATTCTTGCAGTGATCAAATTGCACTGAATTCGATTCAACGGAGATGTGCCAAAGTTTCTTCTGGTGAATCAATATCTGTGAGCAGATTCATCCCGCCTGAGAATTTCAGCTTGACATTGCTATCTTTGGAGCTGGATTTTGTTAAAAGGGGGAATAAAACTGAAAAGGTTGATGCTGTTCTTCTAGCTAATCAACTGCGAAAGAGATTTGGGAACCAGGTTATGACAGCAGGACAGAAAGTACTGTTTGAGTTTCATGGAAACAACTATAGTTTTACAGTCACTCAAGCAGCTCTCGAGGAGCAAGATGGATCTAATACAGTCGAAAGGGGGATGATTACAAAAGACACATATATCGTCTTTGAAGCATCACGTGACAGTGGAATACAGATCGTCAATCAGCGTGAAGCTGCAAGTAGCAAGATTTTCAGGCAAAAGGAGTTTAATCTTCAGTCACTAGGTATTGGTGGCTTAAGTGAAGAGTTTGGAGATATCTTCCGAAGAGCTTTTGCTTCTCGTGTTCTCCCTCCAAATGTGGCAAATAAATTAGGGATCAAGCATGTCAAGGGCATGCTGTTATATGGACCTCCTGGTACTGGCAAGACTCTTATGGCTCGTCAAATTGGAAAAATGTTGAATGGAAAAGAACCAAAGATTGTTAATGGGCCAGAAGTATTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTAAGAGACTTGTTTGCAGATGCTGAAAAAGATCAGCAGACTCATGGAGACCAAAGTGATTTGCATGTCATAATTTTTGATGAAATTGATGCTATCTGCAAGTCAAGAGGTTCCACTAAAGACGGTACTGGTGTTCATGATAGCATAGTGAACCAGCTTCTTACCAAGATAGATGGTGTGGAATCACTGAATAATGTTTTGCTCATTGGAATGACAAACAGAAAAGATTTACTTGATGAAGCCCTTATGCGACCTGGGCGACTGGAGGTACAAGTTGAGATAAGCCTTCCAGATGAGAAAGGCCGGTGCCAAATTCTTCAAATTCATACTAACAAGATGAAGGAGAATTCTTTTCTTGCTCCTGACGTGAACCTTCAAGAGCTTGCTGCTCGTACCAAAAACTACAGTGGTGCCGAACTTGAAGGAGTTGTAAAAAGTGCAGTTTCGTATGCTTTGAATCGACAACTGAATATGGATGATCTAACAAAACCAGTTGATGAAGAAAACATTAAGGTTACAATGCATGACTTTCTTAATGCCCTCAAAGAAGTGATTCCTGCATTTGGAGCTTCCACTGATGACCTAGAACAATGCAGGCTTAATGGCATGGTGGACTGTGGTGATCGACATGAACACATCTATAAACGAGCTATGCTACTTGTTGAACAAGTCAAATTGAGTAAAGGAAGTCCTCTTGTTACCTGCCTTCTCGAAGGACCTAGTGGCAGTGGTAAAACTGCACTTGCAGCTACTGTTGGAATCGATAGTGATTTTCCATATGTCAAAATTATTTCAGCTGAATCTATGATTGGCGTTCATGAGAGTACAAAATGTTCTCAGATTATCAAGGTGTTTGAGGATGCTTACAAATCACCATTGAGCATCATTGTTCTTGACAATATTGAAAGGCTATTGGAGTATGTTGCCATTGGGCCACGATTTTCCAATTTGATTTCACAAACACTGCTAGTCTTACTTAAGCGTCTTCCTTCAAAGAATTAG 1914 0.4096 MVGRFGSPSSEQEISMNVTNTPSQDLAITNLAFCSVSDLHGFGIPGFKDLYLANVGDFLVLSLAYPSDHSCSDQIALNSIQRRCAKVSSGESISVSRFIPPENFSLTLLSLELDFVKRGNKTEKVDAVLLANQLRKRFGNQVMTAGQKVLFEFHGNNYSFTVTQAALEEQDGSNTVERGMITKDTYIVFEASRDSGIQIVNQREAASSKIFRQKEFNLQSLGIGGLSEEFGDIFRRAFASRVLPPNVANKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEKDQQTHGDQSDLHVIIFDEIDAICKSRGSTKDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALMRPGRLEVQVEISLPDEKGRCQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLNMDDLTKPVDEENIKVTMHDFLNALKEVIPAFGASTDDLEQCRLNGMVDCGDRHEHIYKRAMLLVEQVKLSKGSPLVTCLLEGPSGSGKTALAATVGIDSDFPYVKIISAESMIGVHESTKCSQIIKVFEDAYKSPLSIIVLDNIERLLEYVAIGPRFSNLISQTLLVLLKRLPSKN* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00265 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 633 IPR027417 -
Pte18g00265 637 PANTHER VESICULAR-FUSION PROTEIN NSF 14 636 IPR039812 GO:0016887|GO:0035494
Pte18g00265 637 CDD AAA 529 636 - -
Pte18g00265 637 SMART AAA_5 255 402 IPR003593 GO:0016887
Pte18g00265 637 SMART AAA_5 535 633 IPR003593 GO:0016887
Pte18g00265 637 Gene3D - 401 488 - -
Pte18g00265 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 498 IPR027417 -
Pte18g00265 637 SUPERFAMILY Cdc48 domain 2-like 101 204 IPR029067 -
Pte18g00265 637 FunFam Vesicle-fusing ATPase 401 488 - -
Pte18g00265 637 FunFam vesicle-fusing ATPase isoform X1 497 637 - -
Pte18g00265 637 Gene3D - 10 98 - -
Pte18g00265 637 FunFam Vesicular-fusion ATPase SEC18 211 401 - -
Pte18g00265 637 Gene3D - 497 637 IPR027417 -
Pte18g00265 637 ProSitePatterns AAA-protein family signature. 370 388 IPR003960 GO:0005524|GO:0016887
Pte18g00265 637 Pfam AAA+ lid domain 426 481 IPR041569 -
Pte18g00265 637 Gene3D - 208 400 IPR027417 -
Pte18g00265 637 Pfam ATPase family associated with various cellular activities (AAA) 540 631 IPR003959 GO:0005524|GO:0016887
Pte18g00265 637 Pfam ATPase family associated with various cellular activities (AAA) 259 399 IPR003959 GO:0005524|GO:0016887
Pte18g00265 637 SUPERFAMILY ADC-like 13 98 IPR009010 -
Pte18g00265 637 Gene3D - 101 199 - -
Pte18g00265 637 Pfam Cell division protein 48 (CDC48), domain 2 125 164 IPR004201 -
Pte18g00265 637 FunFam Vesicle-fusing ATPase 102 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00265 Pte-Chr18 4251142 4262032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00265 160 474 Calmodulin-binding Proteins AT3G56690 29.022 8.89e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00265 K06027 - qsa:O6P43_031841 1045.8