Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00259 ATGGCCTTTCAGCGCTACTTTTCTCAGGAATGGAAAACCATCCGAAGTTCTGTGGTTGAATCAGAAAGCTCCAAAGGTTGTTTTGACTGTAATATATGCTTGGACTTCGCACACGAACCCGTAGTCACCCTATGTGGCCATCTCTACTGTTGGCCATGCATCTACAAGTGGCTTCATGTGCAGAGCGATTCACTTGCTTCCCATGAACACCCACAATGCCCGGTTTGTAAGGCGGATATCTCTCACACTACAATGATCCCATTGTATGGTCGGGGCCAATCCACAAGTGATAGTGAAGGGAAAACCCCCTCTCGGGGAATGATCATACCACCAAGACCACCTGCTTGCGGTGTTCACATTGCATTACCAAATGCAATTCAAAGCAGTCAGCAGCAGCTTCCATATCGAAATCCATCTCAGAGTCAGCATTACCAGACTCATCCAGAGGATACTTCTTCCCCATTGATGCATTTTGGAGGGTCTATGACACCAGGGATGCATAATCCCGTTGTTGGTATGGTTTATGCTAGAGTTTTTGGGAATTCGGAGAGTATATATACCTATCCAAATTCATATCAGTTGATGGGGAGCAATAGTCCTAGATTGAGAAGGCAGGAGATGCAGGCCGATAAATCATTGAACAGAATTTCTATTTTCCTCTTCTGCTGCTTTCTTCTCTGTCTTATTGTGTTTTAG 696 0.4497 MAFQRYFSQEWKTIRSSVVESESSKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSDSLASHEHPQCPVCKADISHTTMIPLYGRGQSTSDSEGKTPSRGMIIPPRPPACGVHIALPNAIQSSQQQLPYRNPSQSQHYQTHPEDTSSPLMHFGGSMTPGMHNPVVGMVYARVFGNSESIYTYPNSYQLMGSNSPRLRRQEMQADKSLNRISIFLFCCFLLCLIVF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00259 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte18g00259 231 SUPERFAMILY RING/U-box 26 89 - -
Pte18g00259 231 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Pte18g00259 231 CDD RING-HC_AtRMA-like 28 78 - -
Pte18g00259 231 MobiDBLite consensus disorder prediction 131 155 - -
Pte18g00259 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Pte18g00259 231 SMART ring_2 30 76 IPR001841 -
Pte18g00259 231 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Pte18g00259 231 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 129 - -
Pte18g00259 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 145 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00259 Pte-Chr18 4123345 4125973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00259 26 217 C3H Transcription Factor Family AT4G27470 41.463 1.84e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00259 K10666 - qsa:O6P43_031837 336.265