Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte18g00259 | ATGGCCTTTCAGCGCTACTTTTCTCAGGAATGGAAAACCATCCGAAGTTCTGTGGTTGAATCAGAAAGCTCCAAAGGTTGTTTTGACTGTAATATATGCTTGGACTTCGCACACGAACCCGTAGTCACCCTATGTGGCCATCTCTACTGTTGGCCATGCATCTACAAGTGGCTTCATGTGCAGAGCGATTCACTTGCTTCCCATGAACACCCACAATGCCCGGTTTGTAAGGCGGATATCTCTCACACTACAATGATCCCATTGTATGGTCGGGGCCAATCCACAAGTGATAGTGAAGGGAAAACCCCCTCTCGGGGAATGATCATACCACCAAGACCACCTGCTTGCGGTGTTCACATTGCATTACCAAATGCAATTCAAAGCAGTCAGCAGCAGCTTCCATATCGAAATCCATCTCAGAGTCAGCATTACCAGACTCATCCAGAGGATACTTCTTCCCCATTGATGCATTTTGGAGGGTCTATGACACCAGGGATGCATAATCCCGTTGTTGGTATGGTTTATGCTAGAGTTTTTGGGAATTCGGAGAGTATATATACCTATCCAAATTCATATCAGTTGATGGGGAGCAATAGTCCTAGATTGAGAAGGCAGGAGATGCAGGCCGATAAATCATTGAACAGAATTTCTATTTTCCTCTTCTGCTGCTTTCTTCTCTGTCTTATTGTGTTTTAG | 696 | 0.4497 | MAFQRYFSQEWKTIRSSVVESESSKGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSDSLASHEHPQCPVCKADISHTTMIPLYGRGQSTSDSEGKTPSRGMIIPPRPPACGVHIALPNAIQSSQQQLPYRNPSQSQHYQTHPEDTSSPLMHFGGSMTPGMHNPVVGMVYARVFGNSESIYTYPNSYQLMGSNSPRLRRQEMQADKSLNRISIFLFCCFLLCLIVF* | 232 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte18g00259 | 231 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 8 | 228 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Pte18g00259 | 231 | SUPERFAMILY | RING/U-box | 26 | 89 | - | - | |
Pte18g00259 | 231 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 77 | IPR001841 | - | |
Pte18g00259 | 231 | CDD | RING-HC_AtRMA-like | 28 | 78 | - | - | |
Pte18g00259 | 231 | MobiDBLite | consensus disorder prediction | 131 | 155 | - | - | |
Pte18g00259 | 231 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 76 | IPR018957 | GO:0046872 | |
Pte18g00259 | 231 | SMART | ring_2 | 30 | 76 | IPR001841 | - | |
Pte18g00259 | 231 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
Pte18g00259 | 231 | FunFam | E3 ubiquitin-protein ligase RMA1H1 isoform A | 6 | 129 | - | - | |
Pte18g00259 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 145 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte18g00259 | Pte-Chr18 | 4123345 | 4125973 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte18g00259 | 26 | 217 | C3H Transcription Factor Family | AT4G27470 | 41.463 | 1.84e-40 | 137 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte18g00259 | K10666 | - | qsa:O6P43_031837 | 336.265 |