Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00257 ATGGCCAAAACTGCGTTGGAGCTCAAGCACCAAGGCGTGTCAACCTTACAGGATGGAGACTGCCTGCAGTGTTCAAGTCCAAGACCCCGTATTCTAGCTCCCTTTCTAAACAAGACATATGACTTATTAGAAGAAGGTGAAGCTGATGAGAAAGATGGTGTCGACGTCAAGAGAATTGTGTCATGGAATGGAGATGGAACTGGTTTTGTAGTATGGTCTCCAGCTGAGTTCTCAGAGCTCACGTTGCCTAGGTATTTCAAGCATAACAACTTCTCTAGCTTCATTCGCCAACTTAATACCTATGGATTCAAGAAAACATCATCAGAGAGATGGGAATTCAAGCATGAGAAATTCCAGAAGGGATGCAAGCATTTGCTAGTAGAAATTACAAGGAAGAAGAGTGAGACCAGTCTGTTTCCTACATACTTGAAGGCGTCTACAGAAGAGAATGTAATTGTTCCAATGGAGGACACAAATCATATACTACTTTTGCAGGAGAACAGGAATTTAAGAAAGGAGAAGTTGGAACTGGAAATGCAGATAGCCAAATTCAAAGCAATAGAAACAAAGCTTTTGGATTGTCTTTCTGCAGGTTATCAAAATAAAGTTAGGAGGAAATGTTAG 624 0.4103 MAKTALELKHQGVSTLQDGDCLQCSSPRPRILAPFLNKTYDLLEEGEADEKDGVDVKRIVSWNGDGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSERWEFKHEKFQKGCKHLLVEITRKKSETSLFPTYLKASTEENVIVPMEDTNHILLLQENRNLRKEKLELEMQIAKFKAIETKLLDCLSAGYQNKVRRKC* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00257 207 SMART hsfneu3 31 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte18g00257 207 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 185 IPR027725 -
Pte18g00257 207 FunFam Heat stress transcription factor A-6b 28 133 - -
Pte18g00257 207 Coils Coil 160 187 - -
Pte18g00257 207 Gene3D - 29 133 IPR036388 -
Pte18g00257 207 Pfam HSF-type DNA-binding 35 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte18g00257 207 SUPERFAMILY "Winged helix" DNA-binding domain 32 132 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00257 Pte-Chr18 4097745 4099306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00257 25 196 HSF AT5G62020 35.961 2.64e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pte18g00257 HSF_DNA-bind 6.6e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00257 K09419 - qsa:O6P43_031835 266.544