Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00249 ATGTATGTAGCTCCCATGCATAAGTTTTTCAAGGATTCCTTGAAAGTGCTTGAAGCTGATATTCAGCATGCGAATGCTCTTGCCTCAGATTTCCCCAGGGAGTACGATGGTGCTTGTTTACAAATGAGGATGTCTTACAGCCCTGCGGCACATTTCTTACTATTTTTGGTACAGTGGACGGACTGCCATCTTGCTGGAGCCCTTGGATTGCTGAGGATACTAATTTACAAGGTCTATGTGGATGGAACAACTACTATGTCTACTCATGAAAGGAAGGCAAGCATAAGAGAATTCTACGCTGTAATATATCCCTCTTTGTTGCAACTTCAGAGAGGTCTCACTGATACGGAAGATAAAAAGCAAAAGGCTGTATGTATGGAGAGGTATAGAAGAAGAGACGATGATGATTGTAAGATATCGGATATAGACATAGAACGAGAAGAAGAATGTGGTATATGCATGGAAATGAATAGCAAGATTGTGTTACCAAACTGCAACCATGCCATGTGCATGAAATGTTATCAAGAATGGCGAACAAGATCACAGTCCTGCCCATTTTGCCGTGGCTGTCTTAAAAGAGTGAATTCTGGTGATCTTTGGGTGTTCACTGAAAGCAGGGACATAGTAGACACGGCTGCAGTGACAAGGGAGGACCTCAGAAGGCTGTTCCTGTATATAGACAAGTTGCCTGTAGCGATCCCAGATTCACTTTTCCATACGTATGATATTCATCTAAGATAA 741 0.4224 MYVAPMHKFFKDSLKVLEADIQHANALASDFPREYDGACLQMRMSYSPAAHFLLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQRGLTDTEDKKQKAVCMERYRRRDDDDCKISDIDIEREEECGICMEMNSKIVLPNCNHAMCMKCYQEWRTRSQSCPFCRGCLKRVNSGDLWVFTESRDIVDTAAVTREDLRRLFLYIDKLPVAIPDSLFHTYDIHLR* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00249 246 Pfam Zinc finger, C3HC4 type (RING finger) 147 192 - -
Pte18g00249 246 PANTHER RING FINGER PROTEIN 41, 151 9 242 - -
Pte18g00249 246 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
Pte18g00249 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 197 IPR013083 -
Pte18g00249 246 SMART ring_2 150 187 IPR001841 -
Pte18g00249 246 FunFam RING/U-box superfamily protein 129 197 - -
Pte18g00249 246 ProSitePatterns Zinc finger RING-type signature. 165 174 IPR017907 -
Pte18g00249 246 SUPERFAMILY RING/U-box 138 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00249 Pte-Chr18 3881038 3884415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00249 115 188 C3H Transcription Factor Family AT5G41350 35.897 7.69e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00249 K25840 - qsa:O6P43_012630 432.565