Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00243 ATGGGTTGTTGCTGCTTTAGGGCATTAGATGTGGTGGAAAGATGGAGACATGCTCATACTTCTGGTGGAGTCGATGGTCTTCCACATTGTAAAATTAAACAATTCTCCATCAATGAACTAAGATCTGCGACGGACAACTTCCATTTGACCAGAAAGATTGGGAGAGGAGGTTTTGGGACAGTTTATAAGGGGTCCTTAAAAAAAGGCGAACAGGTTGCAGTGAAGAAGCTTGCTGTTGGATCAAAACAGGGTGCTCAAGAATTTTTGACTGAGATAAATACAATATCACATGTCAAGCATCCTAACCTTGTTCAATTGATTGGCTGCTGTGTTGATGGATCTGAGAGGGTGTTAGTGTACGAGTATGTGGAAAATAGCAGTCTTAATCATGCATTGCTCGACTCAAAGACAAAAATCAGGTTAAGCTGGAGTGATAGATCAATAATTTGCATTGGCATAGCTAAGGGGCTTGCTTACCTTCACGAGGAATGTGTGCCACATATTGTGCACCGTGACATAAAAGCTAGTAATATACTCCTTGATAAACACTTTATCCCCAAAATTGGTGACTTTGGGTTGGCTAAACTTTTCCCAGAGGATATCACTCACATCAGCACAAGAATTGCTGGGACAACTGGATATTTAGCACCGGAATATGCAGTAGGTGGCCAATTGACAATGAAAGCAGACGTTTACGGTTTTGGAGTTCTTTTGCTTGAAATAATTAGTGGCAGAAGCAGTGCAAGCTCAAACTGGGGCGAGAAACCAAAATTACTTCTCGAGTGGGCATGGCAGCTTCATGAAGAAGGGAAACTCTTGGAACTAGTGGACCCTGACATGGAAGAAATTCCTGAGGAAGAAGTGATTAGATACATGAAGGTTGCTTTTTTCTGCACACAAGCAAAAGCTACTCGGAGGCCGATGATGTCTCAGGTCGTTGATATGCTGTCAAGGAATGTTCGGCTTAACGATAAGGAACTAACAGCCCCAGGATATTTTCAAGATTTTGGGCTTAGTGACGAAACTTCTATGAAGACATCAGGCTCTGCAAACCACAAACATAGCTCTGCCTCTATCACAGACACTAATGTCCCTCCACGGTTATAG 1107 0.4255 MGCCCFRALDVVERWRHAHTSGGVDGLPHCKIKQFSINELRSATDNFHLTRKIGRGGFGTVYKGSLKKGEQVAVKKLAVGSKQGAQEFLTEINTISHVKHPNLVQLIGCCVDGSERVLVYEYVENSSLNHALLDSKTKIRLSWSDRSIICIGIAKGLAYLHEECVPHIVHRDIKASNILLDKHFIPKIGDFGLAKLFPEDITHISTRIAGTTGYLAPEYAVGGQLTMKADVYGFGVLLLEIISGRSSASSNWGEKPKLLLEWAWQLHEEGKLLELVDPDMEEIPEEEVIRYMKVAFFCTQAKATRRPMMSQVVDMLSRNVRLNDKELTAPGYFQDFGLSDETSMKTSGSANHKHSSASITDTNVPPRL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00243 368 ProSiteProfiles Protein kinase domain profile. 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g00243 368 Pfam Protein tyrosine and serine/threonine kinase 48 316 IPR001245 GO:0004672|GO:0006468
Pte18g00243 368 Gene3D Phosphorylase Kinase; domain 1 25 122 - -
Pte18g00243 368 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 355 - -
Pte18g00243 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Pte18g00243 368 FunFam Receptor-like serine/threonine-protein kinase At4g25390 16 122 - -
Pte18g00243 368 SMART serkin_6 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g00243 368 MobiDBLite consensus disorder prediction 343 368 - -
Pte18g00243 368 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
Pte18g00243 368 PIRSF TyrPK_CSF1-R 43 128 - -
Pte18g00243 368 PIRSF TyrPK_CSF1-R 123 365 - -
Pte18g00243 368 SUPERFAMILY Protein kinase-like (PK-like) 31 334 IPR011009 -
Pte18g00243 368 CDD STKc_IRAK 53 318 - -
Pte18g00243 368 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
Pte18g00243 368 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00243 Pte-Chr18 3796884 3803491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00243 30 366 Receptor kinase-like Gene Family AT1G56120 50.445 4.85e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pte18g00243 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00243 - - jre:108990611 506.908