Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00228 ATGGAGGAAAGTATAAATTTGAGTTGTCTCAATTCTGAGTATGATGAAGCTGAGGATGTGATTCTAGATCTTGATATGTTCTACGACATTCTTGGTGAAGATTCTGATCCTTCACTGAAAAATCCAGAGGAATTTCTCAACAATGGGTCGACGGAGTTATTAGCTTCAGAGGCAGAGAGCCATTACAATTTTGTTCAACAAAGTGGCATATTAAATCCTGGAGCAAGAGCTTTGGATGGTTTATTTGATTCTGCAGTAAATCCTGTCCCAAGTATTGAATGCCGGAAGTTGGAGGAGGGATATGGAACTTGCTCTCTTGGGCATGATTCAATTTCAAATGATGGTTCTAGAGATTGGCTTTCTCTTGTACATAGAGATGATGCGATGAACTCAGAAAGGATTGAACTTTCATGTTGTCAGATGCCAATTTCCTGCATCAGTTTGGAACCTAGATGTTCTGATGCTGATGCTAAGCATATGCCATGTTTCGTTGACAATTTAGACATCAGTGATGGACTCAAGCAAGTGGAGGGGAACAAGGACCACAACTCTTCTTCACAAACTAGTTTTCCTGGGATTGATGAAAGATTTGGATCTGGGGCTATGAATAAGAGAAGTGTAATTGAAGCATCTGGATGGGCAGAAAATAGTTCAAGTTCATTCTTGCAGATGCCTTTCATGGATGCAAGTGGTTCTTCTCATGTGGCAACCTCATACGATTCTGGCATCTGTCTGGATTCCAATGCCATTAGTGACTATGCTGTTTGTCGCTCATCTATCCATTATTCAAATGATGTTGATCATCGGCAATTTGTCCCTGGTCCCTCACTTGATTATTTTCCTTCTAGTTTTCATTCTCAATTGTTATCATATAGTGATGAAGCAAATACTACTGATGTGAAGGAGCAGTTATTCGCCGACACTGCACGTGCAACCAATATTAATACTGGAGTTACTGGGAATAAAAATTTTCCACCTGGAACAGAATTTTCATCTATGGGCAATTCAAATGCAGAAGTGTGGAAAATTGCCTGTCAAGATGGTCAATATCTGTCAGTAAATAGTGGAGGTTCTTCATTTGATGATGGGGAAGGTGATTATGTTCTTGAAGAGAGGAAATCTGCTCAACCTGTTCCTTTCACTCACCTCAACTGTAGCATGGAGCAAGTTTTACCTGGTTCTGATGATAAAAAATTTGACGAATTTCGACCCTCTTATCAAAATTATTGTATTCAGTTGAATCCTTACTCAAATGAAAAGGCAACACAATTTTTAGGGTGCTCACCTTATTCCCAGTACAGAAATAGTATTGATCAATGTGCAATGTTATCTGGGAGTACCTATAATTGGAATATGCGACCACCTGCATACCAGATATCCGATCCCAGTGCGAAGCAGTTAAGTTGTCTTCACAGTGAAAGGGAGGTAGAGATAATTCAAAATGAAGTTTCTGGCTCCCATTGTTCGGAGCTCAGCTATACTCCGATTCATGGGAAGTCTAGTATGGTGGATGATGATGATGATGATTTGTGTATTATTGAAGCTATGAGTCATCCTGCACCTATAAATAGATCAAAATCGCCTTACATGTCAGTAAATACTTCAAAATGTAATGTAAATGGGGGATATCCTCCTTTCTCAGCTGAAGGTGCTAGGATTGCTGCAAATAATGAGCGACATATATTACAAGTGGCATTGCAGGACTTATCACAACCAAAGTCAGAAACTTATCCACCAGAAGGAGTGCTGGCTGTTCCTCTTTTGAGACATCAGAGAATTGCTTTATCGTGGATGGTCCAAAAGGAAACAGCAGGCTTATGCTGCTCTGGAGGAATTCTTGCAGATGATCAGGGGCTTGGAAAAACAGTGTCAACAATAGCTCTTATACTCAAGGAACGTCCCCCTCCTGCTAAATGTTCCAATATTGTTGAAAAAACTAGATCAGAAACTTTTGATTTGGATGAGGATGATGTCAATTGCAAAAAGGAAGTTAAATTGCCAGATGCATTTAAACAAATTTCAATGAAGGGCATTTCTTCTTCAGCTCAAGCTAAGGGCAGGCCATCTGCTGGAACACTCATAGTTTGCCCTACCAGTGTTTTGCGTCAATGGGCTGATGAATTGCACAATAAAGTGACAAAAGAAACAAATCTCTCTGTTCTTGTGTACCATGGAAATAGAACAAGAGACCCTTACGAGCTTGCCAAGTATGATGTGGTTATCACCACTTACTCAATTGTCAGCATGGAGGTTCCAAAGCAGCCTTTTGTTAATAGGGATGGTGAGGAACTACTGAGTTATGATGAGCATGCTGTTCCACCAACGGTATTTCCGTCAAGCAAGAAAAGGAAAAATCATCCTAGCTCAAATAAAAAGTCTTCTAAGAAAGTAGAAGCTGCTTTGCTTGAATCTGCTGCTGGGCCTCTTGCAAAAGTGGCGTGGTTCAGAGTTGTCCTAGATGAGGCCCAGAGCATAAAAAATCACAGAACTCAAGTGGCAAGGGCCTGCTGGGGTCTACGTGCAAAACGCAGGTGGTGCTTGTCTGGGACACCTATCCAGAATGCTATTGATGATCTCTACAGCTATTTCAGATTTCTCAGATATGACCCATATGCAGTTTATAAATCATTTTGTTCCACAATCAAGTTCCCTATAACTAGATGTCCAACAAAAGGATACAGAAAGCTGCAGGCTGTCTTGAAGACAATAATGTTACGTCGAACTAAAGGCACAATTCTTGATGGTCAACCTATTATTTCTCTACCACCCAAATATGTAGAGCTCAGAAGGGTTGAGTTTTCAGATGAAGAACGTGATTTCTACTCCAGATTAGAGGCTGACTCACGGGCCCAATTCAAAGAATATGCTGACGCTGGAACAGTAAAACAAAACTATGTTAACATTTTGTTGATGCTTTTGCGCCTTCGACAAGCTTGTGATCATCCACTTCTGGTCAACTATGATTCTAATTCCCTGGGGAAAAATTCAATCGAGATGGCAAAGAAACTTCCACGGGAGAAACAAGAGTGTCTTCTTAATTGTTTAGAAGCTTCCTTGGCTCTATGTGCCATTTGTAATGATTCTCCAGAAGATGCTGTTGTTTCCATCTGTGGTCATGTATTCTGCAACCAGTGCATCTGCGAACATCTCACTGGTGATGAAAACCAATGCCCTACTGCGAAGTGCAAAGTTCAACTGACCAAATCCTCTGTATTTTCCAAAGCCACATTAAGTGATTGTTTCTCTGACCATACTTCTAGTTCACCTGGTTCTTGCTCAGAAGTTATTGATGAGGTCGACCCTTGTTCTAAGAGTCTGCCAACTGATTCTTCTAAAATTAAGGCTGCCCTTGAGTTTCTGCTAACTTTGTGTAAACCTCAAGATAGTACGTCATCGGATGTCTCTACTGGGAGTTCTTGTACAGAGATCAGTGATTCTCCTGTGGACTTGTCTGATAATCGTATGAGGAGTCGCTTAAAAGATTGTCCTCAGAATAGGAGTACGTCAATGAATGAAAAATTGAATAATGCAATCACAGTAAGTGGTGGCAAGGCCATAGTGTTTTCTCAGTGGACAAGAATGTTAGATTTGTTCGAAGCTGCCCTGAAGAATTCTTCAATCCAATATAGAAGGCTTGATGGGACAATGTCAGTGGTTTCCAGGGATAACGCTGTTAAGGAATTTAACACACTTCCTGAGGTCTCGGTTATGATTATGTCTCTCAAAGCTGCAAGTCTTGGTCTGAACATGGTTGCTGCTTGCAATGTTCTTATGCTTGATCTTTGGTGGAACCCTACTACCGAAGATCAGGCAATAGACAGAGCACATAGAATTGGGCAGACTCGACCTGTTACAGTTTTGAGATTAACTGTGAGAGACACAGTTGAAGATCGAATTTTAGCTCTACAGCAAAAGAAGCGAGCCATGGTTGCATCTGCATTTGGAGAGGATGGAGCTGAAGGCCGTCAGACACGCCTTACAGTGAAAGACCTCGAATACCTGTTTATGGCTTGA 4014 0.4101 MEESINLSCLNSEYDEAEDVILDLDMFYDILGEDSDPSLKNPEEFLNNGSTELLASEAESHYNFVQQSGILNPGARALDGLFDSAVNPVPSIECRKLEEGYGTCSLGHDSISNDGSRDWLSLVHRDDAMNSERIELSCCQMPISCISLEPRCSDADAKHMPCFVDNLDISDGLKQVEGNKDHNSSSQTSFPGIDERFGSGAMNKRSVIEASGWAENSSSSFLQMPFMDASGSSHVATSYDSGICLDSNAISDYAVCRSSIHYSNDVDHRQFVPGPSLDYFPSSFHSQLLSYSDEANTTDVKEQLFADTARATNINTGVTGNKNFPPGTEFSSMGNSNAEVWKIACQDGQYLSVNSGGSSFDDGEGDYVLEERKSAQPVPFTHLNCSMEQVLPGSDDKKFDEFRPSYQNYCIQLNPYSNEKATQFLGCSPYSQYRNSIDQCAMLSGSTYNWNMRPPAYQISDPSAKQLSCLHSEREVEIIQNEVSGSHCSELSYTPIHGKSSMVDDDDDDLCIIEAMSHPAPINRSKSPYMSVNTSKCNVNGGYPPFSAEGARIAANNERHILQVALQDLSQPKSETYPPEGVLAVPLLRHQRIALSWMVQKETAGLCCSGGILADDQGLGKTVSTIALILKERPPPAKCSNIVEKTRSETFDLDEDDVNCKKEVKLPDAFKQISMKGISSSAQAKGRPSAGTLIVCPTSVLRQWADELHNKVTKETNLSVLVYHGNRTRDPYELAKYDVVITTYSIVSMEVPKQPFVNRDGEELLSYDEHAVPPTVFPSSKKRKNHPSSNKKSSKKVEAALLESAAGPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYKSFCSTIKFPITRCPTKGYRKLQAVLKTIMLRRTKGTILDGQPIISLPPKYVELRRVEFSDEERDFYSRLEADSRAQFKEYADAGTVKQNYVNILLMLLRLRQACDHPLLVNYDSNSLGKNSIEMAKKLPREKQECLLNCLEASLALCAICNDSPEDAVVSICGHVFCNQCICEHLTGDENQCPTAKCKVQLTKSSVFSKATLSDCFSDHTSSSPGSCSEVIDEVDPCSKSLPTDSSKIKAALEFLLTLCKPQDSTSSDVSTGSSCTEISDSPVDLSDNRMRSRLKDCPQNRSTSMNEKLNNAITVSGGKAIVFSQWTRMLDLFEAALKNSSIQYRRLDGTMSVVSRDNAVKEFNTLPEVSVMIMSLKAASLGLNMVAACNVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRAMVASAFGEDGAEGRQTRLTVKDLEYLFMA* 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00228 1337 SUPERFAMILY RING/U-box 1019 1073 - -
Pte18g00228 1337 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 490 1336 - -
Pte18g00228 1337 Pfam Zinc finger, C3HC4 type (RING finger) 1022 1059 - -
Pte18g00228 1337 SMART ultradead3 583 884 IPR014001 -
Pte18g00228 1337 MobiDBLite consensus disorder prediction 775 795 - -
Pte18g00228 1337 ProSitePatterns Zinc finger RING-type signature. 1037 1046 IPR017907 -
Pte18g00228 1337 SMART ring_2 1022 1060 IPR001841 -
Pte18g00228 1337 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 869 IPR014001 -
Pte18g00228 1337 ProSiteProfiles Zinc finger RING-type profile. 1022 1061 IPR001841 -
Pte18g00228 1337 Gene3D - 671 772 IPR038718 -
Pte18g00228 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 1336 IPR027417 -
Pte18g00228 1337 Gene3D - 922 1336 IPR027417 -
Pte18g00228 1337 Pfam SNF2-related domain 607 984 IPR000330 GO:0005524|GO:0140658
Pte18g00228 1337 CDD DEXDc_SHPRH-like 587 907 - -
Pte18g00228 1337 SMART helicmild6 1196 1279 IPR001650 -
Pte18g00228 1337 MobiDBLite consensus disorder prediction 176 195 - -
Pte18g00228 1337 CDD SF2_C_SNF 1181 1289 - -
Pte18g00228 1337 Gene3D - 775 920 IPR038718 -
Pte18g00228 1337 Gene3D - 558 650 IPR038718 -
Pte18g00228 1337 Pfam Helicase conserved C-terminal domain 1178 1279 IPR001650 -
Pte18g00228 1337 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 789 919 - -
Pte18g00228 1337 MobiDBLite consensus disorder prediction 179 193 - -
Pte18g00228 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 907 IPR027417 -
Pte18g00228 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1015 1073 IPR013083 -
Pte18g00228 1337 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1173 1332 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00228 Pte-Chr18 3627239 3636342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00228 510 1337 RAD5 or RAD16-like Gene Family AT1G61140 61.876 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte18g00228 SNF2_N 2.4e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00228 - - qsa:O6P43_031798 1255.35