Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte18g00209 | ATGAACGACCTATTCTCCAGCTCCTTCAAAAAATACACAGATCTGAAGCAGCAAGCCTACTTGGACGATGTGGAGGCTGGCAAGGAAAACCCTAGTCTGGACAAGTTCTTTGAGGAAGTGGAGAATGTTAAAGAAGATATGAGGCAAGTTGAGAAGCTCTACAAGAAACTACAGGAAGCCAATGAAGAATGCAAAATCGTCCACAATGCTAAAACCATGAAGGAGCTAAGATCCAGGATGGACGCAGAAGTGAATCAGGTCTTAAAACGTGTAAAGCTTATCAAGGGGAAGCTTGAAGCTTTAGAGCGTTCCAATGCAGATCAGAGAAAGCTTCCCGGCTGCGGCCCAGGTTCGTCTGCTGATCGAACAAGGACCTCAGTAGTGTGTGGATTGGGGAAGAAACTCAAAGATATGATGGATAATTTTCAAGGACTGAGAGCAAGAATGCAAGCTGAGTACAAGGAAACAGTGGAAAGAAGATATTTCACTGTGACAGGAGAGAAAGCAGATGAAGATACCATTGAAAATTTGATATCAAGTGGAGAAAGTGAAAGCTTCCTGCAGAAGGCAATTCAGGAACAAGGAAGGGGTCAGATAATGGACACCATTTCTGAAATCCAAGAAAGGCATGATGCTGTCAAGGAAATAGAAAAGAACTTGATTGAACTGCATCAGGTTTTCTTAGACATGGCTGCTCTTGTGGAGGCTCAAGGGCAACAGCTAAATGACATAGAGAGTCATGTGGCGCATGCAAATTCTTTTGTGAGACGAGGCACAACTCAGCTTGAGGAAGCTAGAGAGTATCAGAAGAGTTCAAGGAAATGGATGTGCTTCGCTGTACTTCTCGGCATCCTCCTCCTCATTGCTATCCTCTTGCCTGTGTTGAATGTATTTTTCCATTTCATCACAATAGCTCGATGA | 921 | 0.4365 | MNDLFSSSFKKYTDLKQQAYLDDVEAGKENPSLDKFFEEVENVKEDMRQVEKLYKKLQEANEECKIVHNAKTMKELRSRMDAEVNQVLKRVKLIKGKLEALERSNADQRKLPGCGPGSSADRTRTSVVCGLGKKLKDMMDNFQGLRARMQAEYKETVERRYFTVTGEKADEDTIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVEAQGQQLNDIESHVAHANSFVRRGTTQLEEAREYQKSSRKWMCFAVLLGILLLIAILLPVLNVFFHFITIAR* | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte18g00209 | 306 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
| Pte18g00209 | 306 | Gene3D | - | 194 | 298 | - | - | |
| Pte18g00209 | 306 | PANTHER | SYNTAXIN | 41 | 284 | IPR045242 | - | |
| Pte18g00209 | 306 | FunFam | Syntaxin 132 | 196 | 296 | - | - | |
| Pte18g00209 | 306 | Coils | Coil | 33 | 70 | - | - | |
| Pte18g00209 | 306 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Pte18g00209 | 306 | Gene3D | - | 33 | 160 | - | - | |
| Pte18g00209 | 306 | Coils | Coil | 84 | 104 | - | - | |
| Pte18g00209 | 306 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 30 | 160 | - | - | |
| Pte18g00209 | 306 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
| Pte18g00209 | 306 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
| Pte18g00209 | 306 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
| Pte18g00209 | 306 | SUPERFAMILY | t-snare proteins | 31 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
| Pte18g00209 | 306 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
| Pte18g00209 | 306 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
| Pte18g00209 | 306 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte18g00209 | Pte-Chr18 | 3379140 | 3380526 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte18g00209 | 1 | 295 | SNARE and Associated Proteins | AT1G61290 | 78.983 | 1.67e-178 | 493 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte18g00209 | K08486 | - | qsa:O6P43_012571 | 505.368 |