Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00208 ATGACGACTGCTCCACCACCTGCGCCGCCGCCGGCTTCGTCGTCGTCTGCTTCAGCGTCATCGTTGTCCAAGGTTTGCTTTAATACAGAGTGTAAGGAATTGAAGTCAGATAGGTCTAAGAAAGGTTGGAGGCTCCGAACTGGCGAGTTTGCTGAGCTTTGTGATCGTTGCGGTTCTACATTTGAGGAAGGAAGATTCTGTGAGACTTTCCACTTAAATGCCTCTGGATGGAGATCTTGTGAGTCTTGTGGGAAGCTGATTCATTGTGGATGCATTGTTTCAAGTCATACCTTCATGATGCTGGATCCTGGTGGAATTGAATGCTTCACATGTGCAAGGAAAAACTTTGTAATGCCATCAAATCCAGTATGGCCATCGTCTTTCTTTTTCCAGTCATCTTTTTCTGAGAGACTCAAGGACCTTTCTGCTAGAAGTTGGAGTCAGTTGGCTGGATCAGGACCTGTTCCTTGGAAGCAAGCACCAAGCCTGTTCAATTCTTCATTTACTTCATCTGAACCTCATCCAAGGGTGCCCTATGAACTTGACATATCAAATGGAGTTGCTAAACTGAACGTGTCTTCCCTTGAAAAGAAAACTGAAGATTTATCTGACAGATCTGTGAATGGGAGTGCAAACCTTGGGGCATATGATCTTGCAATTTTGAATGGAACCAAATCTGATGACAAAATCGATTCATGTTTGAACACTTCCCAACAGTCTGCATCTCTAAAGGAAAACTTACCTGCACCACCAATTATTTTGACTGCATCTAATGCCTTTGCAAGTGAAAGAAATGGCCAAATAAGGATGGCTGGGGCTCTTCCACAATCAGCTCCTTCAACTTCTCAGATTAAGCAGTATAATGGGGACGTCTTCAATGTACTTGATGCATCTGGTGAGAATCCTAATCGCAATGGACGGCCAAAGATAGAGCCACGGGGAAGGAATCAATTACTGCCCCGTTACTGGCCTAGATGTACTGACCAAGAGAAACAGCAAATATGTAGAGAACCAAATTCTGATCTTACTCCATTATTTCAAAAGACTCTGAGTGCCAGTGATGCTGGGCGGATTGGGCGTTTAGTGCTTCCAAAAAAATGTGCAGAGGCGTATTTTCCACCTATTTCTCAACCAGAGGGGTTGCCGCTAAAAATTTTGGATATGGAAGGGAAAGAGTGGGTATTTCAGTTCCGCTTCTGGCCAAACAACAACAGCAGGATGTATGTTTTAGAGGGAGTTACTCCTTGCATACAGTCCATGCAATTGCAGGCAGGTGATACAGTAACATTTAGTCGGCTGGAGCCTGGCGGGAAGCTAGTAATGGGGTTTAGAAAGGCTTCAATTGCATCACCACCTGATCAGGATACAGAAACAAAGAAGTCTGGGATTGTTGCAAATGGTGATGCTGACTTGGTAGCTCCTAGTTCATGGTCTAAAGTTGACAAGTCAGGATACATAGCAAAAGAAGCAGCAGGAATTAAATCCTCTGTCAGCAAAAAAAGGAAGAGTGGCATCTTAGGTTTGAAGAGTAAGAAGCTGAGAATTGATGATGAAGATCTAATAGAGTTGAAGATTACATGGGAAGAAGCTCAATGCCTGCTTCGTCCCCCTCCTAATCATATTCCCAGTATTGTGGTTATTGAGGGCTTTGAATTTGAGGAATATGAGGTTGCTCCTGTTATTGGAAAGCCAACAATTTTCACTACTGATGATGTGGGTGGAAAGATTCAGTGGGTAAAGTGTGAAGATTGTCTTAAATGGCGCAAGCTGCCAGGCAATGCCATTCTTCCATCAAGATGGACATGCTCTGATAATTCAACTGATCCACAAAGATCCTTATGTTCATCAGCCCAGGAAATGACAACTGAACGACTTGAAGACCTTCTAACACATTGTAATTCAGCTCCCCTGAGGAAAATGAAAGCTGCCAAGCATGACCCTGATAATGTTGAAGCCTTAGAAGGGCTTGACACACTAGCAAACCTAGCCATCTTGGGCGAGGGTGATACACTTCCATCATCAGCCCAAGCAACAACAAAGCATCCACGTCATAGACCTGGTTGCACATGCATTGTTTGCATCCAACCTCCAAGCGGGAAGGGTCCAAAGCATAAGCAGTCATGTACATGTAATGTTTGCTTGACAGTGAAGCGACGTTTTCGCACTTTAATGTTGCGGCGTGAAAAGAAACAATCAGAGAGAGATGCTGAGAGCACTCGTAAGAAGCAGGAGCCGGAACATCTGCCAGAATCAATGCCTGAAAACATAGTTGATGATGATGCCATTTTGTCTGTTGATACCAGAGATAATAGTGGGAACGACAACAAGGAGGTCGATGATAGTTCAGAAGATGATCCTAGCAGGGCAAAATCATCCAATTCACCATTTAAAGGTCAAATTGACCTTAATATCCAACCAGAACGAGAGGAAGAGCTTTCTCCTAGTGCAGATTCTGGTAGTATGATGAAGTTGCTCCAGGATGCTACTGAGAGGTATCTCAGTGAGCAACGTGTATCTGGTTGTGTTGGCGATTCCTCAAACTGTCAATCACAGGTAGTCGAAGGTGGCTTAGGTGAAGAAAACCTCAAGAATAGCATAATTGGTAACAACAATTGTGACAATAGAGAGGATAAAGGCAGTACTTTACCCATAAAAGTTGCTGCATCTACCTGA 2673 0.4377 MTTAPPPAPPPASSSSASASSLSKVCFNTECKELKSDRSKKGWRLRTGEFAELCDRCGSTFEEGRFCETFHLNASGWRSCESCGKLIHCGCIVSSHTFMMLDPGGIECFTCARKNFVMPSNPVWPSSFFFQSSFSERLKDLSARSWSQLAGSGPVPWKQAPSLFNSSFTSSEPHPRVPYELDISNGVAKLNVSSLEKKTEDLSDRSVNGSANLGAYDLAILNGTKSDDKIDSCLNTSQQSASLKENLPAPPIILTASNAFASERNGQIRMAGALPQSAPSTSQIKQYNGDVFNVLDASGENPNRNGRPKIEPRGRNQLLPRYWPRCTDQEKQQICREPNSDLTPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDMEGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPGGKLVMGFRKASIASPPDQDTETKKSGIVANGDADLVAPSSWSKVDKSGYIAKEAAGIKSSVSKKRKSGILGLKSKKLRIDDEDLIELKITWEEAQCLLRPPPNHIPSIVVIEGFEFEEYEVAPVIGKPTIFTTDDVGGKIQWVKCEDCLKWRKLPGNAILPSRWTCSDNSTDPQRSLCSSAQEMTTERLEDLLTHCNSAPLRKMKAAKHDPDNVEALEGLDTLANLAILGEGDTLPSSAQATTKHPRHRPGCTCIVCIQPPSGKGPKHKQSCTCNVCLTVKRRFRTLMLRREKKQSERDAESTRKKQEPEHLPESMPENIVDDDAILSVDTRDNSGNDNKEVDDSSEDDPSRAKSSNSPFKGQIDLNIQPEREEELSPSADSGSMMKLLQDATERYLSEQRVSGCVGDSSNCQSQVVEGGLGEENLKNSIIGNNNCDNREDKGSTLPIKVAAST* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00208 890 MobiDBLite consensus disorder prediction 761 787 - -
Pte18g00208 890 FunFam B3 domain-containing transcription repressor VAL1 324 451 - -
Pte18g00208 890 Pfam CW-type Zinc Finger 577 619 IPR011124 GO:0008270
Pte18g00208 890 ProSiteProfiles Zinc finger CW-type profile. 572 622 IPR011124 GO:0008270
Pte18g00208 890 MobiDBLite consensus disorder prediction 724 820 - -
Pte18g00208 890 Pfam B3 DNA binding domain 346 445 IPR003340 GO:0003677
Pte18g00208 890 MobiDBLite consensus disorder prediction 866 890 - -
Pte18g00208 890 MobiDBLite consensus disorder prediction 1 21 - -
Pte18g00208 890 MobiDBLite consensus disorder prediction 726 754 - -
Pte18g00208 890 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 23 844 - -
Pte18g00208 890 CDD B3_DNA 344 445 IPR003340 GO:0003677
Pte18g00208 890 ProSiteProfiles B3 DNA-binding domain profile. 346 447 IPR003340 GO:0003677
Pte18g00208 890 SMART B3_2 346 447 IPR003340 GO:0003677
Pte18g00208 890 Gene3D - 324 449 IPR015300 -
Pte18g00208 890 Gene3D - 568 624 - -
Pte18g00208 890 SUPERFAMILY DNA-binding pseudobarrel domain 343 446 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00208 Pte-Chr18 3367843 3377579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00208 306 730 B3 DNA Binding Superfamily AT4G32010 56.075 1.43e-155 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte18g00208 B3 1.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00208 K09287 - qsa:O6P43_012570 1249.96