Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00195 ATGGGAAGAACACCATGTTGTGATAAGAATGGACTGAAGAAAGGTCCATGGACAGCAGAGGAAGATCAGATACTTGTTGATTATATTCAGAAACATGGCTATGGAAATTGGAGGACACTTCCTAAGAATGCTGGTTTGCAAAGATGTGGAAAGAGTTGTCGTCTCAGATGGACAAACTATCTGAGGCCTGACATCAAACGCGGTCGTTTTACTTTTGAAGAAGAGGAGACAATTATTCAGCTCCATAGTATTCTGGGGAACAAGTGGTCGACAATTGCTTCTCGTTTACCTGGAAGAACAGACAATGAAATCAAGAACTACTGGAACACACACATCAGGAAAAGGCTTCTCAGGATGGGGATTGATCCTGTGACACACAGTCCCAGGCTTGATCTTCTCGACATCTCATCAATTCTGAGCTCATCTCTTTACAACTCATCACAAATGAACATGTCAAGGCTCCATGGTATCCAACCTTTGGTCAACCCTGAACTTCTAAAACTGGCTTCCTCTCTTGTATCATTACAGAGAGGAAACCAAAACTTCTGCAGTACCCAAAATAGCCAAGACTACAATCTTCACTTATATAGATCCCAGATTGATAACCATATTGACCAAATCCAAGAAATTCAACCTTGCTCCTCATTGAGTACCCCATGTGTCTCTTACCCTTTAAATGACACACAGTTTGTTGAAGCCAATGCAGAGGGTTACCCATCAAGCACTGACAACTTTAGTGATTGGCAAAGCAATGGAATCACATGTGGTGGTCTGGCTCAAGACTATGTGCTGATTCCAAGCCACAATCTTAACTATTCGACTGAGCAGAGTATCTTAGACCCAGCAATGTGTGAGACCTCGGCTTACCATTCAAACAGCAGCAACCGAAATTTGGGGTTCACTTCAGTGTTATCAACCCCTTCTTCAAGTCCAACTCCATTGCATTCAAACTCAACATATGTCAACAGCTGCAGCAGCACTGAAGATGAGAGAGAAAGCTATGGAAGCAATAACCTTTTGAAATTTGATATCCCTGCAATGTTGGATATGAATTATGAGTTCATGTAA 1068 0.4195 MGRTPCCDKNGLKKGPWTAEEDQILVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTFEEEETIIQLHSILGNKWSTIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILSSSLYNSSQMNMSRLHGIQPLVNPELLKLASSLVSLQRGNQNFCSTQNSQDYNLHLYRSQIDNHIDQIQEIQPCSSLSTPCVSYPLNDTQFVEANAEGYPSSTDNFSDWQSNGITCGGLAQDYVLIPSHNLNYSTEQSILDPAMCETSAYHSNSSNRNLGFTSVLSTPSSSPTPLHSNSTYVNSCSSTEDERESYGSNNLLKFDIPAMLDMNYEFM* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00195 355 CDD SANT 69 112 IPR001005 -
Pte18g00195 355 Gene3D - 69 116 - -
Pte18g00195 355 FunFam Transcription factor MYB39 69 130 - -
Pte18g00195 355 CDD SANT 16 61 IPR001005 -
Pte18g00195 355 Gene3D - 13 66 - -
Pte18g00195 355 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte18g00195 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte18g00195 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte18g00195 355 FunFam MYB-related transcription factor 13 66 - -
Pte18g00195 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
Pte18g00195 355 SMART sant 13 63 IPR001005 -
Pte18g00195 355 SMART sant 66 114 IPR001005 -
Pte18g00195 355 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte18g00195 355 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte18g00195 355 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte18g00195 355 MobiDBLite consensus disorder prediction 304 329 - -
Pte18g00195 355 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00195 Pte-Chr18 3124585 3125902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00195 1 351 MYB Transcription Factor Family AT4G21440 58.491 2.65e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g00195 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00195 K09422 - tcc:18596975 437.187