Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00190 ATGGTTATGGCTTCCATCTCTAACCAAGAGAAAGCTCTGCTGAAAAAAGGTCCGTGGAGTACTGAAGAAGATAGAAAGTTGATAGCTTACATTGAGAGATATGGCATCTGGAATTGGAGTCATATGGCAAAACCTGCTGGTCTTACAAGGTCTGGGAAGAGTTGCAGACTTCGTTGGATGAATTACCTGAGACCTGGCATTAAGCGAGGACATTTCAGCAAGGAAGAAGAGGACATAATAGTGAAGCTGCATGCAGAGATGGGAAACCGATGGTCAGCCATTGCAGCAAAACTGCCGGGGAGGACTGACAATGAAGTGAAGAACCACTGGCATGCAAACTTGAAGAAACGTACATCACAGACACATACATCCTTCCAAGTGGGGAAGCTAGACGAGGCCTCTTCTGAATTAAGTCTCTCACTTTCCATTGTCCAAGCAGACCAGTCTGATGTCTTCGTTGGAAGCTGTCTCCCACTGATCAATTAA 486 0.4547 MVMASISNQEKALLKKGPWSTEEDRKLIAYIERYGIWNWSHMAKPAGLTRSGKSCRLRWMNYLRPGIKRGHFSKEEEDIIVKLHAEMGNRWSAIAAKLPGRTDNEVKNHWHANLKKRTSQTHTSFQVGKLDEASSELSLSLSIVQADQSDVFVGSCLPLIN* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00190 161 SMART sant 15 65 IPR001005 -
Pte18g00190 161 SMART sant 68 116 IPR001005 -
Pte18g00190 161 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 124 - -
Pte18g00190 161 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pte18g00190 161 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pte18g00190 161 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pte18g00190 161 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pte18g00190 161 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Pte18g00190 161 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pte18g00190 161 CDD SANT 18 63 IPR001005 -
Pte18g00190 161 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Pte18g00190 161 FunFam MYB-related transcription factor 15 68 - -
Pte18g00190 161 Gene3D - 70 136 - -
Pte18g00190 161 CDD SANT 72 114 IPR001005 -
Pte18g00190 161 Gene3D - 7 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00190 Pte-Chr18 3057400 3058102 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00190 10 135 MYB Transcription Factor Family AT1G06180 63.492 1.43e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g00190 Myb_DNA-binding 4.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00190 K09422 - qsu:111996902 187.963