Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00188 ATGGGTTTCTTTGGAGAACATGATTCTAAGTTAAGGTATTTTGGAATTTGGTATAAAGATATTGAACCACCAACGTTCATATGGGTCGCAAACAGAGATGTACCTCTGGCAGATGCAGCAGGAATGGTAACAATTGTCAGTGACGGCAATTTGGTAATTTTAAATGGGGCCAACAAGAGTGTTTGGTCGAGTAATGTCACAACAAGTTCATCGACCCACTACAGTGCTGTTCTGCAAGACACAGGAAATCTCATTCTTTTGGATGGCAATAATACTTCAAATCCATATTGGCGGAGTTTTGATCATCCAGGTGATACGTTTCTTCCCGGTATGAAATTCAGTGTCACTGCTACCGTGGGAGAGAATTTTTGCACTTCATGGAAGTCTCCGACTGATCCAAGTCCCGGAGATTACAGGATGGGAATTGATCCGACGAAAGCACCCCAGATAGTTTTATGGGAAAGAGACAATAGGCGATGGAGAAGTGGATATTGGGATGGAAGAATATTCACAGGTGTAGCAAATATGATAGGTCATTATCTGTATGGCTTTAAGCTTTCTGATGATGGCGATAACCGGTATTTTTCATATGCCTTATTGAACAAGTCTGATAAGTTGAGGTTTCAGATAACATGGGATGGGTATGAGAAAACGTTTAAGTGGAATGAAACTGAAAATGAATGGGAAGAGTGTCAACTTCTGCCTTCAGATGACTGTGATCTTTACAACAGGTGTGGGAACTTTGGAATTTGCAGCCATTCTGGTGATTCCCTTTGTAGTTGTATGAAAGGGTTTGAGCCTGTAAATGTGGATCAATGGAAGAAAAGGAATTGGTCTGGAGGGTGCAAGAGGAAGACACCACTGAAATCAGAGAGGAATGTTAGTGCTGCAGATGGAGAAAATGTAGATTATGATGATGGCTTTCTTGAAGTGAAGAACACGAAGTTGCCGGATTTTGCTCAATTGATGGTGATGGCTCAAAACGACATTGGGGGTTGTGAACATATATGTCTGCAGAATGATTCTTGCACTGCATTCGCTCTAGTCAATGGGATTGGATGCATGATATGGAATGGAGATTTACATGACATTCGAATTTTCGATAGGAGTGGAAATACGCTCAATGTTCGACTTGCTGCATCTGATTTAGATGCTAAAAGAAAGATATCCGTGGTTGTTATAATGGTAGCCGTCGTGGCAGGGCTAATTTTCCTCGGGGTTTCAATGTGGATAATATGGAGGTTCAAGTTCAAACTGAAAGTATCCACAGCATCATGTTGTAATAGTGAGATACCTGTTTTTCAAGTGACAAAGGGTATAGAAACCTCTAAGGAGTTTTCAGGATCAGTTGACACTACAATGGAAGGCGATCAAGAATACGGACCAGAACTGCCATTGTTCAATTTCAACTGCGTTGCCAGAGCCACCTATCATTTCTCAGAGGCCAATAAATTGGGGCAAGGGGGATTTGGACCTGTTTACAAGGGAATCCTTCCAGGAGGACAAGAAATAGCTTTGAAAAGGCTCTCAAGAAAGTCTGGGCAAGGTTCAGAGGAGTTCAAGAATGAGGTTATACTGCTTGCCAAACTGCAGCATCGAAATCTTGTTAGACTATTGGGTTGCTGCATTCAAGGGGAGGAAAAGATGCTGCTGTATGAGTACATGCCAAACAAAAGCTTGGATTGCTTTATCTTTGGTATGTTTTCTTGCAGATTGTTGTAA 1722 0.4158 MGFFGEHDSKLRYFGIWYKDIEPPTFIWVANRDVPLADAAGMVTIVSDGNLVILNGANKSVWSSNVTTSSSTHYSAVLQDTGNLILLDGNNTSNPYWRSFDHPGDTFLPGMKFSVTATVGENFCTSWKSPTDPSPGDYRMGIDPTKAPQIVLWERDNRRWRSGYWDGRIFTGVANMIGHYLYGFKLSDDGDNRYFSYALLNKSDKLRFQITWDGYEKTFKWNETENEWEECQLLPSDDCDLYNRCGNFGICSHSGDSLCSCMKGFEPVNVDQWKKRNWSGGCKRKTPLKSERNVSAADGENVDYDDGFLEVKNTKLPDFAQLMVMAQNDIGGCEHICLQNDSCTAFALVNGIGCMIWNGDLHDIRIFDRSGNTLNVRLAASDLDAKRKISVVVIMVAVVAGLIFLGVSMWIIWRFKFKLKVSTASCCNSEIPVFQVTKGIETSKEFSGSVDTTMEGDQEYGPELPLFNFNCVARATYHFSEANKLGQGGFGPVYKGILPGGQEIALKRLSRKSGQGSEEFKNEVILLAKLQHRNLVRLLGCCIQGEEKMLLYEYMPNKSLDCFIFGMFSCRLL* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00188 573 ProSiteProfiles Bulb-type lectin domain profile. 1 99 IPR001480 -
Pte18g00188 573 SUPERFAMILY Protein kinase-like (PK-like) 457 568 IPR011009 -
Pte18g00188 573 ProSiteProfiles Protein kinase domain profile. 479 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g00188 573 CDD B_lectin 1 103 IPR001480 -
Pte18g00188 573 Pfam S-locus glycoprotein domain 160 268 IPR000858 GO:0048544
Pte18g00188 573 ProSiteProfiles PAN/Apple domain profile. 302 379 IPR003609 -
Pte18g00188 573 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 444 554 - -
Pte18g00188 573 Gene3D Phosphorylase Kinase; domain 1 443 554 - -
Pte18g00188 573 Gene3D - 1 100 IPR036426 -
Pte18g00188 573 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 564 - -
Pte18g00188 573 SMART ntp_6 303 378 IPR003609 -
Pte18g00188 573 Pfam D-mannose binding lectin 25 128 IPR001480 -
Pte18g00188 573 SMART blect_4 1 103 IPR001480 -
Pte18g00188 573 Pfam Protein tyrosine and serine/threonine kinase 482 564 IPR001245 GO:0004672|GO:0006468
Pte18g00188 573 ProSiteProfiles EGF-like domain profile. 235 271 IPR000742 -
Pte18g00188 573 SUPERFAMILY alpha-D-mannose-specific plant lectins 26 133 IPR036426 -
Pte18g00188 573 CDD PAN_AP_plant 303 379 - -
Pte18g00188 573 Pfam PAN-like domain 305 364 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00188 Pte-Chr18 3014738 3018676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00188 467 565 Receptor kinase-like Gene Family AT3G45860 64.646 3.65e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pte18g00188 S_locus_glycop 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00188 - - qsa:O6P43_012535 673.7