Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00158 ATGGGGAGAGGAAAGATAGTGATTCGAAGGATTGATAACTCCACCAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAGTGGACTGATGAAGAAGGCACGAGAATTGTCCATTCTTTGTGATGCTGAAGTTGGATTGATTGTTTTCTCAAGCACTGGGAAGCTCTACGACTATGCCAGCAACAGCATGGGAGCAATTATCGAACGTTACCACCAGCAAAGGGAGGAGCATCATCAGCTCATGAGTCCCAAGTCCGAGGTGAAGTTTTGGCAAAGGGAGACAGCGACGTTGAGACAACAACTGCAGCACTTACAAGGATACCAAAGGAAATTGATGGGTGAAGAACTCTCAGGATTGAGTATTGCAGATCTAAAGAGTTTAGAAAGCCAACTGGAGATGAGTTTGAAGGGCGTGCGTATGAAAAAGGATCAAATTCTAAATGAAGAAATAGAAGAGTTAAAAGAAAAGGAAACTCTGATTCATGAAGAAAATGCAGAACTCTACAAAAAGATCGATCTAATGTATAGAGAAAATGCAGAACCACCGAATGAGGCTTACAGGTCAAAGGAAGAAGAAGAAAACACAACACGTTTCGTCTCATTCATTGATGATAATGGTGGGAATGATTTATGTGCATCCACATCACTCCAGTTAAGCCAACCACTATCTGATCATAGCGAAGCCCAGCAGGAAGGTGAAAGAAACTGGGCAGATCACATCTTTCATTCACGGAGTTGTCTGTCACTTAACTGGAAGATGATAAGTTGA 765 0.4222 MGRGKIVIRRIDNSTSRQVTFSKRRSGLMKKARELSILCDAEVGLIVFSSTGKLYDYASNSMGAIIERYHQQREEHHQLMSPKSEVKFWQRETATLRQQLQHLQGYQRKLMGEELSGLSIADLKSLESQLEMSLKGVRMKKDQILNEEIEELKEKETLIHEENAELYKKIDLMYRENAEPPNEAYRSKEEEENTTRFVSFIDDNGGNDLCASTSLQLSQPLSDHSEAQQEGERNWADHIFHSRSCLSLNWKMIS* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00158 254 Coils Coil 145 165 - -
Pte18g00158 254 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte18g00158 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Pte18g00158 254 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte18g00158 254 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pte18g00158 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte18g00158 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte18g00158 254 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pte18g00158 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte18g00158 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte18g00158 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte18g00158 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte18g00158 254 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte18g00158 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte18g00158 254 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00158 Pte-Chr18 2652734 2658116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00158 1 224 MADS-box Gene Family AT2G22630 54.464 8.95e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte18g00158 K-box 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00158 K09264 - tcc:18608170 292.737