Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00144 ATGGAGGATTCTGAAGGCGGACTAAGCTTCGACTTCGAAGGAGGTCTCGACACTGCTCCCGCCAACAACACCGCATCAGTAACTCCAAATCAATCCGACCCAGCCGGTACTGCAATTTCCAGCGTAGTCAATGTTGCTGCAGCCACCGACACATTCGCCAAACCAAACGACCAAGCGGGTGGAGGAAATATTCCCGGTCGACGAAGCTACCGGCAGACTGTGTGTAGGCACTGGCTTCGTAGTCTCTGTATGAAAGGTGACGCTTGTGGATTCTTACACCAATACGATAAATCACGGATGCCAGTTTGCCGGTTCTTTAGATTATATGGCGAGTGTCGTGAAAATGATTGTGTGTATAAGCATTCCAACGAAGATATCAAGGAGTGTAACATGTACAAATTAGGATTTTGTCCGAATGGTCCTGATTGCCGCTATAGGCATGCCAAGATGATTGGACCGCCTCCTCCTGTTGAAGAGGTTCTTCAAAAGATACAGCATTTATATGCATACAACTATGGCCCCTCCAATAAATATTTCCAACAACGAGGTGCTAACTTCAACCATCAAGCTGAAAAATCTCAGAATCAGCAAGGTCCTAGCTCCATTAATCAAGGAGCAGCTGGCAAAGCATTGACTGGCGAATCCGGTAGTGTGCAGCAACGGCAGCAACAAATTCAACAGTTCCAACAGCAAATTGGACAAACACAAACACAAAATCTTCAGAATGGTCAGAGTACACAGCCCTGCAGATCTGCCACACCTTTGCCTCAAGGAATATCTAGGTATTTTATTGTAAAAAGCTGCAACCGTGAAAATTTGGAATTATCTGGACAGCAAGGAGCATGGGCTACCCAAAAGAGCAACGAAGCTAAATTGAATGAAGCTTTTGACTCTGCTGAAAATGTGATATTGATTTTCTCTGTCAATCGGACTCGACACTTCCAGGGCTGTGCAAAAATGACATCTAGAATTGGTGGCTTTGTCGGTGGTGGAAACTGGAAATATGCCCATGGAACTGCACATTATGGGCGGAACTTTTCATTAAAATGGCTCAAGTTATGTGAGCTATCATTCCACAAGACTCGCCACTTAAGGAATCCATTTAACGAAAACCTACCAGTGAAGATAAGTAGAGACTGTCAAGAGCTGGAGCCCTCTGTTGGCGAGCAGTTGGCTTCTTTACTTTATCTGGAGCCTGATAGTGAACTTATGGCAATGTCACTTGCAGCTGAGTCAAAACGGGAAGAGGATAAGGCAAAGGGAGTCAACACAGACAACGGAGGAGAAAATCCAGACATCGTACCATTTGAGGACAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGATGAGAACTTTGGCCAAGTTGCTGGGGTAGCTAATCAGGAAAGGGGTAGGGGAAGAGGAGTCATGTGGCCTCCTCATATGCCTATGGGACGTGGAGCCAGACCAATGCCTGGAATGCAGGTTTTTCCCCCAATGATGATGGGTGCTGATGGGATGCCCTATGGACCTGTTACACCTGATGGATTTGGTATGCCGGATCTATTTGGCATGGGACCTCGGGGTTTTGGTCCATATGGTCCAAGATTTATGGGTGACTTTTCAGCTCCTCCAGCAATGATGTTTCGAGGGCGACCCTCGCAACCTGGGGTATATCCAGGTGGTGGATATGGGATGATGATGAATCCAGGTCGTGCCCCTTTCATGGGAGGAATGGGTGTTCCAGGTCCAATTGCTGGTCGGGGCAGTCGACCGGTTGGTATGCCTCATATGTTCCCTCCACCACCACCATCTCAGAACCGACCTGTGAAAAGAGATCAAAGAACTGGAGCCAATGACAGATATATTGCAGGATCAGAACTCAAGAGTCAAGAATTTCAAAGCTCTGCTGGTGGACCTGACGATGGCTCCCAACAGCAAGGATTCAAAGGTCAACATGAAGATCAATATGGTGGCAAAGACAATCTGATAAATGACGAAAGTGAAAGTGAGGATGAAGCACCCAGACGATCAAGACATGGTGAAGGAAAAAAGAAACGGCGGAACTTGGAAGACATTGCAACTAGCTCAACCCACTAG 2085 0.4676 MEDSEGGLSFDFEGGLDTAPANNTASVTPNQSDPAGTAISSVVNVAAATDTFAKPNDQAGGGNIPGRRSYRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECRENDCVYKHSNEDIKECNMYKLGFCPNGPDCRYRHAKMIGPPPPVEEVLQKIQHLYAYNYGPSNKYFQQRGANFNHQAEKSQNQQGPSSINQGAAGKALTGESGSVQQRQQQIQQFQQQIGQTQTQNLQNGQSTQPCRSATPLPQGISRYFIVKSCNRENLELSGQQGAWATQKSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSRIGGFVGGGNWKYAHGTAHYGRNFSLKWLKLCELSFHKTRHLRNPFNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAMSLAAESKREEDKAKGVNTDNGGENPDIVPFEDNEEEEEEESEEEDENFGQVAGVANQERGRGRGVMWPPHMPMGRGARPMPGMQVFPPMMMGADGMPYGPVTPDGFGMPDLFGMGPRGFGPYGPRFMGDFSAPPAMMFRGRPSQPGVYPGGGYGMMMNPGRAPFMGGMGVPGPIAGRGSRPVGMPHMFPPPPPSQNRPVKRDQRTGANDRYIAGSELKSQEFQSSAGGPDDGSQQQGFKGQHEDQYGGKDNLINDESESEDEAPRRSRHGEGKKKRRNLEDIATSSTH* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00144 694 MobiDBLite consensus disorder prediction 649 688 - -
Pte18g00144 694 MobiDBLite consensus disorder prediction 409 471 - -
Pte18g00144 694 Coils Coil 218 238 - -
Pte18g00144 694 SMART c3hfinal6 69 95 IPR000571 GO:0046872
Pte18g00144 694 SMART c3hfinal6 125 149 IPR000571 GO:0046872
Pte18g00144 694 SMART c3hfinal6 97 123 IPR000571 GO:0046872
Pte18g00144 694 MobiDBLite consensus disorder prediction 189 230 - -
Pte18g00144 694 Gene3D - 65 127 - -
Pte18g00144 694 ProSiteProfiles Zinc finger C3H1-type profile. 97 122 IPR000571 GO:0046872
Pte18g00144 694 MobiDBLite consensus disorder prediction 576 694 - -
Pte18g00144 694 Pfam YT521-B-like domain 339 394 IPR007275 GO:0003723
Pte18g00144 694 Pfam YT521-B-like domain 260 322 IPR007275 GO:0003723
Pte18g00144 694 Gene3D ph1033 like domains 238 398 - -
Pte18g00144 694 MobiDBLite consensus disorder prediction 623 647 - -
Pte18g00144 694 ProSiteProfiles Zinc finger C3H1-type profile. 69 96 IPR000571 GO:0046872
Pte18g00144 694 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 58 677 IPR045168 -
Pte18g00144 694 MobiDBLite consensus disorder prediction 409 423 - -
Pte18g00144 694 CDD YTH 261 395 IPR007275 GO:0003723
Pte18g00144 694 SUPERFAMILY CCCH zinc finger 68 99 IPR036855 GO:0046872
Pte18g00144 694 ProSiteProfiles YTH domain profile. 260 395 IPR007275 GO:0003723
Pte18g00144 694 ProSiteProfiles Zinc finger C3H1-type profile. 123 150 IPR000571 GO:0046872
Pte18g00144 694 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 65 125 - -
Pte18g00144 694 MobiDBLite consensus disorder prediction 434 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00144 Pte-Chr18 2477411 2487759 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte18g00144 YTH 2e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00144 K14404 - qsu:112035887 989.564