Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00122 ATGGCTCCTAAGAAAGGTGTAAAGGCTCCTGTGGTATCGAAGAAGAAATCTGACAAGGTTGTTAACCCGTTGTTTGAAAAACGTTCTAAACAATTTGGCATTGGTGGAGCTTTGCCCCCCAAGAGAGACCTGTCACGGTTTGTGAAATGGCCGAAAGTTGTTCGCCTCCAGAGGAAGAAAAGGATCCTTAAGCAACGCTTGAAGGTTCCTCCAGCACTTAATCAATTTACCAAAACTCTGGATAAGAATCTTGCGACAAACCTGTTCAAACTGCTTCTCAAATATAGACCTGAGGATAATGCAGCAAAGAAGGAACGCCTGATGAAACGGGCTCAAGCTGAGGCTGACGGAAAATCTGTTGAGGCCAAGAAGCCTATTGTTGTGAAGTATGGACTCAACCATATCACCTATCTCATTGAGCAGAACAAGGCCCAGTTGGTTGTTATTGCTCATGATGTGGACCCAATAGAACTTGTTGTTTGGCTCCCTGCTTTATGCAGAAAGATGGAGATTCCTTACTGCATCGTGAAGGGAAAATCGCGTCTGGGAGCGATTGTGCACAAGAAAACTGCTGCAGCCTTATGCTTGACCACAGTTAAAAACGAGGATAAACTAGACTTCAGCAGAATCCTAGAAGCCATAAAGGCGAACTTCAATGACAAGTATGATGAGTACAGAAAGAAGTGGGGAGGTGGTATCATGGGGTCCAAATCTCAGGCCAAAACTAAAGCGAAAGAGAGACTTTTAGCCAAGGAAGCTGCACAGAGGATGACTTGA 777 0.4466 MAPKKGVKAPVVSKKKSDKVVNPLFEKRSKQFGIGGALPPKRDLSRFVKWPKVVRLQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKLLLKYRPEDNAAKKERLMKRAQAEADGKSVEAKKPIVVKYGLNHITYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGAIVHKKTAAALCLTTVKNEDKLDFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMT* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00122 258 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 42 241 - -
Pte18g00122 258 PRINTS Ribosomal protein L7A/RS6 family signature 128 142 IPR018492 -
Pte18g00122 258 PRINTS Ribosomal protein L7A/RS6 family signature 147 160 IPR018492 -
Pte18g00122 258 PRINTS Ribosomal protein L7A/RS6 family signature 173 187 IPR018492 -
Pte18g00122 258 PRINTS Ribosomal protein L7A/RS6 family signature 163 173 IPR018492 -
Pte18g00122 258 ProSitePatterns Ribosomal protein L7Ae signature. 166 183 IPR004037 GO:0042254|GO:1990904
Pte18g00122 258 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 118 206 IPR004038 -
Pte18g00122 258 PRINTS Ribosomal protein L7A family signature 29 46 IPR001921 -
Pte18g00122 258 PRINTS Ribosomal protein L7A family signature 90 103 IPR001921 -
Pte18g00122 258 PRINTS Ribosomal protein L7A family signature 217 237 IPR001921 -
Pte18g00122 258 PRINTS Ribosomal protein L7A family signature 46 63 IPR001921 -
Pte18g00122 258 PRINTS Ribosomal protein L7A family signature 66 85 IPR001921 -
Pte18g00122 258 PRINTS Ribosomal protein L7A family signature 185 209 IPR001921 -
Pte18g00122 258 PRINTS Ribosomal protein L7A family signature 124 144 IPR001921 -
Pte18g00122 258 Gene3D - 50 233 IPR029064 -
Pte18g00122 258 FunFam 60S ribosomal protein L7a 50 233 - -
Pte18g00122 258 SUPERFAMILY L30e-like 88 229 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00122 Pte-Chr18 2096451 2098744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00122 1 259 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 86.873 2.98e-169 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00122 K02936 - qsu:112034677 441.039