Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00113 ATGGCGCTTTCTATGCACAAAGATTTATCAAACAAGCAGATGGACAGTAGCAAGTATGTGAGGTATACACCTGAGCAGGTTGAAGCTTTAGAAAGAGTGTATTCAGAATGTCCAAAGCCTAGCTCTTTGAGAAGGCAGCAGCTCATAAGAGAATGTCCTATACTCTCTAACATTGAATCGAAACAGATCAAAGTGTGGTTTCAGAACCGCAGATGCCGGGAAAAGCAGAGGAAGGAAGCTTCTCGACTGCAGACAGTAAACAAAAAGCTGAGTGCCATGAACAAGCTTTTAATGGAAGAGAATGACCGTTTGCAGAAGCAGGTTTCACAATTGGTCTATGAAAATGGTTACATGAAACAGCAGCTGCACACTGCTACCGTAAGCACTACAGATAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACACAAACAGCAAAACCCAACACCTCAGCATTCCCATAGGGATGCCAATAACCCAGCAGGTCTTCTTGCAGTAGCTGAGGAGACCATGGCAGAGTTCCTTGCAAAAGCAACGGGAACTGCTATTGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCCATAGGTATCGTTGCTGTTTCCCGCAACTGTACTGGGATAGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACAAAGGTTGCTGAGATACTTAAAGATCGTCTGTCATGGTATCGTGACTGCCGATGCCTAGATGTGTTAAGTGCTATTCCTACAATTAATGGTGGCACAATTGAGCTAATATATATGCAGACATATGCTCCAACGACACTAGCAGCAGCACGTGACTTTTGGACTTTAAGATTCACCACAAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGGTCATTGACTTCTTCAACTGGTGGACCAACAGGACCTCCTACTTCAACTTTTGTGAGAGCGCAAATACTCCCTAGTGGCTTCCTAATTCGGCCTTGTGAGGGTGGCAGCTCAATAATTCACATTGTAGATCATGTTGACTTAGATGCTTGCAGTGTCCCTGAGGTACTCAGGCCACTCTATGAATCATCTAAAGTTCTGGCGCAAAAGACTACAATTGCTGCTCTGCGACATATAAGACAAATTGCACAAGAAGCAAGTGGAGAAATCCAGTGTGGCGGGGGACGTCAGCCTGCCGTCTTAAGGACATTTAGTCAAAGACTCTGTAGGGGTTTTAATGATGCTATTAATGGGTTTGCTGATGATGGTTGGTCATTGATGAGTAATGATGGAGTGGAGGATGTGACCGTTGTCATAAACTCATCTCCTAACAAATTTATTGGATCATACTTCAATACACCGATGTTCCCTAGCTTTGGAGGTGGGGTGCTGTGTGCCAAGGCATCGATGCTACTACAGGATGTCCCACCTGCTTTGCTTGTTCGTTTTCTAAGGGAACACCGCTCAGAATGGGCTGATTATGGTGTGGATGCATACTGGGCAGCATGTCTGAAATCCAGCCCCTATGGAGTTCCTTGTGCAAGGCCTGGTGGCTTCCCTAGTAGCCACGTTATCCTACCACTTGCACAGACTGTCGAGCATGAAGAGTTTCTGGAGGTGGTCCGGCTAGAGGGTCATGCATTTTCACCTGAAGACTTGGCTTTAGCACGAGATATGTATTTCCTGCAGTTGTGCAGTGGGATTGACGAAAGTGCGATTGGATCTTGTGCTCAACTTGTATTTGCACCAATCGATGAATCATTTGCTGATGATGCTTTTTTACTGCCTTCTGGTTTCCGCATCATACCATTAGATCCCAAAGCAGATGGTCTGGCGGGGACTCGCACGTTGGATTTGGCCTCTACTCTTGAGGTGGGATCTGGTAGTGCCCGTCCTTCTGGTGAAGCTGATGTGACTAACTACAATCTTCGGTCAGTGCTGACCATTGCATTCCAATTCACATTTGAGAACAACATGCGTGATAGTGTGGCTGCTATGGCGCGCCAATATGTGCGGAGTGTTGTTGGATCCGTCCAGAGGGTTGCAATGGCAATTACTCCCTCCAAGCTTGGTCCTAGCTTGGCAGCGAAATCTCTTCCTGGTTCTCCTGAGGCTGTTACTTTAGCAAGATGGATATGCCGAAGCTACAGGATCCATACTGGGGCAGAGCTCTTTCGACTCGAGTCTCAAGCTGGTGATGCAATTCTAAAGCAACTTTGGCGCCATTCAGATGCAATCATGTGTTGTTCTGTGAAAACTAATGCATCTCCTGTGTTTACCTTTGCAAATCAATCTGGGCTAGACATGCTTGAAACAACTCTTGTAGCCCTACAAGATATTATGCTGGACAAAGTCCTTGACGAAGCTGGCAGGAAGATTCTTTGTGCTGAGTTCTCCAAGATAATGCAACAGGGGTTTGCATATCTGCCATCAGGAATATGTGTATCCAGCATGGGTCGGCCTGTTTCCTATGAGCAGGCAATTGCATGGAAGGTTCTCAATGATGATGATTCTAATCACTGCCTGGCCTTCATGTTCCTGAACTGGTCTTTTGTTTGA 2538 0.4634 MALSMHKDLSNKQMDSSKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIESKQIKVWFQNRRCREKQRKEASRLQTVNKKLSAMNKLLMEENDRLQKQVSQLVYENGYMKQQLHTATVSTTDNSCESVVMSGQHKQQNPTPQHSHRDANNPAGLLAVAEETMAEFLAKATGTAIDWVQMIGMKPGPDSIGIVAVSRNCTGIAARACGLVSLEPTKVAEILKDRLSWYRDCRCLDVLSAIPTINGGTIELIYMQTYAPTTLAAARDFWTLRFTTSLEDGSLVICERSLTSSTGGPTGPPTSTFVRAQILPSGFLIRPCEGGSSIIHIVDHVDLDACSVPEVLRPLYESSKVLAQKTTIAALRHIRQIAQEASGEIQCGGGRQPAVLRTFSQRLCRGFNDAINGFADDGWSLMSNDGVEDVTVVINSSPNKFIGSYFNTPMFPSFGGGVLCAKASMLLQDVPPALLVRFLREHRSEWADYGVDAYWAACLKSSPYGVPCARPGGFPSSHVILPLAQTVEHEEFLEVVRLEGHAFSPEDLALARDMYFLQLCSGIDESAIGSCAQLVFAPIDESFADDAFLLPSGFRIIPLDPKADGLAGTRTLDLASTLEVGSGSARPSGEADVTNYNLRSVLTIAFQFTFENNMRDSVAAMARQYVRSVVGSVQRVAMAITPSKLGPSLAAKSLPGSPEAVTLARWICRSYRIHTGAELFRLESQAGDAILKQLWRHSDAIMCCSVKTNASPVFTFANQSGLDMLETTLVALQDIMLDKVLDEAGRKILCAEFSKIMQQGFAYLPSGICVSSMGRPVSYEQAIAWKVLNDDDSNHCLAFMFLNWSFV* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00113 845 SMART START_1 165 375 IPR002913 GO:0008289
Pte18g00113 845 MobiDBLite consensus disorder prediction 136 156 - -
Pte18g00113 845 Gene3D - 10 84 - -
Pte18g00113 845 Pfam MEKHLA domain 700 844 IPR013978 -
Pte18g00113 845 Pfam START domain 166 373 IPR002913 GO:0008289
Pte18g00113 845 SUPERFAMILY Bet v1-like 166 377 - -
Pte18g00113 845 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Pte18g00113 845 CDD homeodomain 18 78 IPR001356 GO:0003677
Pte18g00113 845 SUPERFAMILY Bet v1-like 413 600 - -
Pte18g00113 845 Coils Coil 87 114 - -
Pte18g00113 845 CDD bZIP 70 109 - -
Pte18g00113 845 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Pte18g00113 845 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Pte18g00113 845 Gene3D - 201 381 IPR023393 -
Pte18g00113 845 CDD START_ArGLABRA2_like 160 376 - -
Pte18g00113 845 MobiDBLite consensus disorder prediction 136 158 - -
Pte18g00113 845 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Pte18g00113 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 845 IPR044830 GO:0003700
Pte18g00113 845 ProSiteProfiles START domain profile. 156 357 IPR002913 GO:0008289
Pte18g00113 845 SMART HOX_1 15 81 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00113 Pte-Chr18 1952883 1959650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00113 1 846 Homeobox Transcription Factor Family AT2G34710 77.193 0.0 1366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte18g00113 START 1.1e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00113 K09338 - qsu:112031480 1501.49