Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00111 ATGCTAGGGGGGTTATATGGAGACCTACCTCCACCTTCGTCTTCCGAAGAAGAAAAACCCAAGACTGGCTCTGCATCCTCAGTATGGTCTACCAGTACAAAAATGGCTCCGCCCACTTTACGTAAGCCCCCCTCTGTTTTCGCTCCTCCACAGACCATTCTCAAACCATTGAACAAACCTAAGTCTAAGGCTTCAAATCCTTCCCCAGTGATATCCAAAACCGTTGCTTCTTCCCCCTCTGCTGCGGCGGCTGTGCTCCAACCCGCAAATGACAGCGTTCCGGAGCCCGCTTTGGTGGGTGTGACTTCGTCTGTGATCGATGAGTATGACCCATCTAGGCCTAATGATTATGAGGAGTACAGGAGAGAGAGAAAGAGGAAGGCGAGGGAAGCTGAGATGATGAGAGAGCTTGAGAGGAGGAGGCAAGAGGAGGAAGAGAGAGAAAAGGAGAGGAGAGAGAGGGAGGAAAGAGAAAGAGAGAGAGAACGAGAAAGGGATTATGGGAGTGATTCGAGGTTGAATATTTCTGGGGAGGAAGCTTGGCGGAGACGGGCTGCGATGAGCGGTGGTGCAATGCCGCGGTCGCCATCTCCACCTAGCAATGCTGACGGGTTTATCATTGGAAAGTCGGAGACTGGGGGGTTGGGGGTTGGTGCTGGTGGGCAGATGACTGCTGCGCAGAGAATGATGGCTAAGATGGGATGGAAGGAAGGGCAAGGGCTTGGAAAACAAGAGCAAGGGATTACTACTCCTCTAATGGCGAAGAAGACAGATAGGCGTGCTGGTGTTATAGTGAATGCTAGTGAGAATAAGACAGAAAAGAAAGTCAAGAGTGTCAGTTTCAATGGAACGCCCACCAGAGTGCTACTTTTGAGAAACATGGTCGGACCCGGTGAAGTAGATGATGAATTGGAAGATGAGGTAGCATCAGAATGCGCAAAATATGGAACAGTGACAAGGGTTCTCATATTTGAAATTACGGAGCCAAACTTCCCTGCAGATGAGGCAGTGAGAATTTTTGTGCAGTTTGAGAGATCTGAAGAAACTACTAAAGCGTTAATTGACCTTGATAGTCGGTACTTTGGGGGTAGAGTAGTGCGTGCCTCATTTTATGATGAGGAGAAATTCAACAAGAACGAATTAGCACCACTTCCAGGTGAAATTCCTGGTTTTACTTGA 1179 0.4877 MLGGLYGDLPPPSSSEEEKPKTGSASSVWSTSTKMAPPTLRKPPSVFAPPQTILKPLNKPKSKASNPSPVISKTVASSPSAAAAVLQPANDSVPEPALVGVTSSVIDEYDPSRPNDYEEYRRERKRKAREAEMMRELERRRQEEEEREKERREREERERERERERDYGSDSRLNISGEEAWRRRAAMSGGAMPRSPSPPSNADGFIIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASENKTEKKVKSVSFNGTPTRVLLLRNMVGPGEVDDELEDEVASECAKYGTVTRVLIFEITEPNFPADEAVRIFVQFERSEETTKALIDLDSRYFGGRVVRASFYDEEKFNKNELAPLPGEIPGFT* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00111 392 FunFam Putative splicing factor 45 286 372 - -
Pte18g00111 392 PIRSF SPF45 3 388 IPR040052 GO:0045292
Pte18g00111 392 MobiDBLite consensus disorder prediction 58 85 - -
Pte18g00111 392 MobiDBLite consensus disorder prediction 17 38 - -
Pte18g00111 392 Coils Coil 117 167 - -
Pte18g00111 392 Pfam G-patch domain 225 264 IPR000467 GO:0003676
Pte18g00111 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 373 IPR000504 GO:0003723
Pte18g00111 392 SUPERFAMILY RNA-binding domain, RBD 290 376 IPR035979 GO:0003676
Pte18g00111 392 SMART G-patch_5 220 266 IPR000467 GO:0003676
Pte18g00111 392 MobiDBLite consensus disorder prediction 111 179 - -
Pte18g00111 392 ProSiteProfiles G-patch domain profile. 222 268 IPR000467 GO:0003676
Pte18g00111 392 PANTHER SPLICING FACTOR 45 SPF45 1 383 IPR040052 GO:0045292
Pte18g00111 392 CDD RRM_UHM_SPF45 285 381 IPR034653 -
Pte18g00111 392 Gene3D - 282 381 IPR012677 -
Pte18g00111 392 MobiDBLite consensus disorder prediction 1 205 - -
Pte18g00111 392 SMART rrm2_1 288 369 IPR003954 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00111 228 276 C2H2 Transcription Factor Family AT5G26610 48.214 4.95e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00111 K12840 - qsa:O6P43_013116 514.227