Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00100 ATGGACTCAAACACAGACTGGAGATGGGAAGTTGGGACGATGTACAAGAATGCAGAGTCGCACTTGCAAGATTCGATTCTGAGAGTTGGTTGGAGAGACAACATCGTCAGCTTGTTTGATCTTCTTCAGTTTTCACGAACAAAGACGTTCGAAGAAGGCTCTAGCTGCAACAACGTTGCTATGCAAAGCCAGCTTGTGTGTAATGGTTGTCGGAGCATCCTTCTTTATCCTAGGGGGGCTACAAATGTTTGTTGCGCGTTATGCAGTTCAATCACCTCGGTCCCACCACCAGGAATGGAAATGACTCAACTTATATGTGGAGGCTGCAGGACACTGCTAATGTATACACGGGGAGCTACAAGTGTAAGATGCTCATGTTGTCATACTGTTAATCTTGCACCAGCATCTAACCCAATGGCCCACATCAGTTGTGGAAATTGTCGAACGACACTCATGTATCCATGTGGAGCTCCATCAGTAAAATGTGCTGTTTGCCACTTCATTACTAATGTTTCTATGACAAATGGGAGGCTTCCTATTCCTGCACAGAGACCTAATGGTGTCACCTCCGGAACACTGCCTTCTACTTCTACTGCCATGCCCGATTCTCAGAGCCAAACTGTGGTTGTAGAAAATCCTATGTCGGTTGATGAAAGTGGGAAATTGGTCAGCAACGTCGTGGTCGGTGTTACAACAAAGAAAAAATAG 708 0.4562 MDSNTDWRWEVGTMYKNAESHLQDSILRVGWRDNIVSLFDLLQFSRTKTFEEGSSCNNVAMQSQLVCNGCRSILLYPRGATNVCCALCSSITSVPPPGMEMTQLICGGCRTLLMYTRGATSVRCSCCHTVNLAPASNPMAHISCGNCRTTLMYPCGAPSVKCAVCHFITNVSMTNGRLPIPAQRPNGVTSGTLPSTSTAMPDSQSQTVVVENPMSVDESGKLVSNVVVGVTTKKK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00100 235 PANTHER PROTEIN LSD1 62 235 IPR040319 -
Pte18g00100 235 NCBIfam zinc finger domain, LSD1 subclass 141 170 IPR005735 -
Pte18g00100 235 NCBIfam zinc finger domain, LSD1 subclass 103 132 IPR005735 -
Pte18g00100 235 NCBIfam zinc finger domain, LSD1 subclass 64 94 IPR005735 -
Pte18g00100 235 Pfam LSD1 zinc finger 67 91 IPR005735 -
Pte18g00100 235 Pfam LSD1 zinc finger 106 130 IPR005735 -
Pte18g00100 235 Pfam LSD1 zinc finger 144 168 IPR005735 -
Pte18g00100 235 MobiDBLite consensus disorder prediction 181 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00100 Pte-Chr18 1783762 1789120 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pte18g00100 zf-LSD1 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00100 - - cpap:110816376 288.5