Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00093 ATGAAGGAGAGTGGGAGGAAGCAAGGTTCACTATCCCCATGTGCAGCTTGCAAGCTTCTTAGAAGGAGGTGTTCTCAGGATTGTGTCTTTGCCCCTTATTTTCCAGCAGACGAACCCCAGAAGTTTGCCAATGTTCACAAAGTGTTTGGTGCCAGCAATGTCAACAAGATGCTGCAGGAGCTGCCTTTGCACCAGCGTGGAGATGCTGTAAGCAGCATGGTTTATGAAGCAAATGCAAGAGTCAGAGACCCTGTTTATGGTTGCGTTGGGGCTATATCCTCTCTCCAACAACAAATTCATATGCTTCAAACCCAATTGGCCCTAACCCAAGCTGAGGTTGTGCACCTCAAGGTGAGGCAGTCAGCATCCCTATCAAACCATGGGCTCAATCCATCGAGCCCTAGCAATAGTGGCTCAGCCCCATCTAAAATCATGGGATCACATGCGAAGGCAATCTTTGACATTGACATGGTGATGGACCATGCTAGCTTGGGAGAATCAATGTGGTCATGCTGA 516 0.4845 MKESGRKQGSLSPCAACKLLRRRCSQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPLHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIHMLQTQLALTQAEVVHLKVRQSASLSNHGLNPSSPSNSGSAPSKIMGSHAKAIFDIDMVMDHASLGESMWSC* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00093 171 MobiDBLite consensus disorder prediction 124 143 - -
Pte18g00093 171 Coils Coil 92 112 - -
Pte18g00093 171 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Pte18g00093 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 133 - -
Pte18g00093 171 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00093 Pte-Chr18 1698139 1700780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00093 1 172 AS2 family AT1G31320 78.035 2.49e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte18g00093 LOB 1.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00093 - - tcc:18596365 292.352