Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte18g00075 | ATGGAGGATTATGCAGTTTCAGGAGGCAGAGCAACCTTAGATGTAGTGAAGGAAGAAGATGAAGATGAGTTCTGTAGTTGCTGTGGAGATGAAGAAGTGTTGAAGGAGACCGAGGAGTTGGTGAAGGAGGACTTGAAGGAAGAGCTTGATCAACATTCAGCCAGGTTGTATTTCAAGGGTTTGTCAATCACGGGTTTGTCAATCACTGGTTCTGAAGACTCTGATTCCGGGTTTTCTGGAATTGGAGTAGTTATAGAAAGGTCTGCTGGTCTTCCCACTATTCGGGTTCAAAAGCGGCTTGATTTTTATGTCGATGAGACGGTGGCAAACTATTTGGCTCTAATGGCTGGCCTGTTAGTAACTGGGCAGAATAATATCCGTCGTGTCTTTGCTTTTACCGATTCTCAGTTATTGTATGATCAGATTTCTGGTGAGGAAAAGCTTGAGATGCCACTTGTCGATGCTTTGAGAGAAAGGATCACTGAACTTGCCAACAAGTTTGAAACGTTTTCTATCAAACCTTCACCAATTGTTGATCTTGAGCAGGCGTTTCAATTAGCACAAGTGGCAATTGGAGTGGTCTCATTTCATGTGCCTGGGTCAAAATTAGTTGAGAATTGTTCTATTTGCTGTGAGGACAAACCTTCAGTAATGATGGTTAATCTGAAATGCCACCACAAGTTCTGTTCACATTGTATGAGAATCTATGTGGAGAGGAGAATATATACATCTCAAGTCCCCGTACGATGTCCTAATCCGAGGTGCAAGTATTACATTTCCACCTCTGAGTGCAAATTTTTTCTCCCATTCACATGTTTTGAATCTCTGGAGAGAGCCTCAGAAGGCAATTTTCATTTTGACAAAATTTATTGTCCCTTTCCAAGTTGTTCTGTTCTGCTCGATCCTCATGAATGTTTATCAGCAAGGGCAAGTTCTTCAAGCCAATCAGAGAATACATGTGTTGAGTGTCCAGTCTGTCTCAGGTTTATTTGTACTCACTGTAGAGTGCCATGGCATTCTTCAATGAGCTGTGAAGAGTATCAAAATCTTCCATTGGATGAGAGAGATGCTGCTGATATTACCTCGCATCGCTTTGTTCAAAATAAACGATGGTTGCGTTGTCAGCATTGTCGGCAGGTGATTGAGCACACTCAGGGTTGCTACCACATGACATGCAGGTGTGGTCATGAGTTCTGCTACTCTTGTGGTGCGGAATATAGACATGGGCAACAGACCTGTCAATGTGCGTATTGGGAGGAAGAGTATTCTGAAGATGCAGGGACCACATCCGTTCAAGAGTCAGAACAATGGGCATGGGAGACTTTCAACTCTCTCCCTATGGTCATGGATGCATACTCAGAACAAGAACGTTCCCAGCTGGCCCTAATCCAAAGGTTCCTAGCTGGAGGCTTCAGTCTGAGTGACCATAACCTGTGTCAATCTCCTCCCCGCTGTACAGATTCTTATGTAGATGCAATGAAGGATCTTGATCAGCTTCCGTGGCTGGAGAGATTTGTTTCAGTGATAAGTGACAGCTATTATGAGGACTATATGGCATGA | 1560 | 0.4353 | MEDYAVSGGRATLDVVKEEDEDEFCSCCGDEEVLKETEELVKEDLKEELDQHSARLYFKGLSITGLSITGSEDSDSGFSGIGVVIERSAGLPTIRVQKRLDFYVDETVANYLALMAGLLVTGQNNIRRVFAFTDSQLLYDQISGEEKLEMPLVDALRERITELANKFETFSIKPSPIVDLEQAFQLAQVAIGVVSFHVPGSKLVENCSICCEDKPSVMMVNLKCHHKFCSHCMRIYVERRIYTSQVPVRCPNPRCKYYISTSECKFFLPFTCFESLERASEGNFHFDKIYCPFPSCSVLLDPHECLSARASSSSQSENTCVECPVCLRFICTHCRVPWHSSMSCEEYQNLPLDERDAADITSHRFVQNKRWLRCQHCRQVIEHTQGCYHMTCRCGHEFCYSCGAEYRHGQQTCQCAYWEEEYSEDAGTTSVQESEQWAWETFNSLPMVMDAYSEQERSQLALIQRFLAGGFSLSDHNLCQSPPRCTDSYVDAMKDLDQLPWLERFVSVISDSYYEDYMA* | 520 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte18g00075 | 519 | ProSiteProfiles | TRIAD supradomain profile. | 203 | 419 | IPR044066 | - | |
Pte18g00075 | 519 | FunFam | RBR-type E3 ubiquitin transferase | 54 | 193 | - | - | |
Pte18g00075 | 519 | CDD | BRcat_RBR_unk | 287 | 347 | - | - | |
Pte18g00075 | 519 | Gene3D | - | 66 | 193 | IPR036397 | GO:0003676 | |
Pte18g00075 | 519 | CDD | Rcat_RBR_unk | 370 | 406 | - | - | |
Pte18g00075 | 519 | Gene3D | - | 342 | 468 | - | - | |
Pte18g00075 | 519 | SUPERFAMILY | RING/U-box | 205 | 276 | - | - | |
Pte18g00075 | 519 | ProSitePatterns | Zinc finger RING-type signature. | 224 | 233 | IPR017907 | - | |
Pte18g00075 | 519 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 203 | 286 | IPR013083 | - | |
Pte18g00075 | 519 | Coils | Coil | 35 | 55 | - | - | |
Pte18g00075 | 519 | SMART | ibrneu5 | 271 | 344 | IPR002867 | GO:0008270 | |
Pte18g00075 | 519 | SMART | ibrneu5 | 354 | 413 | IPR002867 | GO:0008270 | |
Pte18g00075 | 519 | SUPERFAMILY | Ribonuclease H-like | 67 | 170 | IPR012337 | - | |
Pte18g00075 | 519 | SUPERFAMILY | RING/U-box | 359 | 421 | - | - | |
Pte18g00075 | 519 | Pfam | Reverse transcriptase-like | 73 | 173 | IPR002156 | GO:0003676|GO:0004523 | |
Pte18g00075 | 519 | FunFam | RBR-type E3 ubiquitin transferase | 342 | 467 | - | - | |
Pte18g00075 | 519 | ProSiteProfiles | Zinc finger RING-type profile. | 207 | 254 | IPR001841 | - | |
Pte18g00075 | 519 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 126 | 472 | IPR031127 | GO:0004842|GO:0016567 | |
Pte18g00075 | 519 | Pfam | IBR domain, a half RING-finger domain | 363 | 413 | IPR002867 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte18g00075 | Pte-Chr18 | 1530747 | 1535588 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte18g00075 | 52 | 404 | C3H Transcription Factor Family | AT2G19610 | 27.123 | 2.41e-30 | 120 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte18g00075 | - | - | qsa:O6P43_030227 | 733.406 |