Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00075 ATGGAGGATTATGCAGTTTCAGGAGGCAGAGCAACCTTAGATGTAGTGAAGGAAGAAGATGAAGATGAGTTCTGTAGTTGCTGTGGAGATGAAGAAGTGTTGAAGGAGACCGAGGAGTTGGTGAAGGAGGACTTGAAGGAAGAGCTTGATCAACATTCAGCCAGGTTGTATTTCAAGGGTTTGTCAATCACGGGTTTGTCAATCACTGGTTCTGAAGACTCTGATTCCGGGTTTTCTGGAATTGGAGTAGTTATAGAAAGGTCTGCTGGTCTTCCCACTATTCGGGTTCAAAAGCGGCTTGATTTTTATGTCGATGAGACGGTGGCAAACTATTTGGCTCTAATGGCTGGCCTGTTAGTAACTGGGCAGAATAATATCCGTCGTGTCTTTGCTTTTACCGATTCTCAGTTATTGTATGATCAGATTTCTGGTGAGGAAAAGCTTGAGATGCCACTTGTCGATGCTTTGAGAGAAAGGATCACTGAACTTGCCAACAAGTTTGAAACGTTTTCTATCAAACCTTCACCAATTGTTGATCTTGAGCAGGCGTTTCAATTAGCACAAGTGGCAATTGGAGTGGTCTCATTTCATGTGCCTGGGTCAAAATTAGTTGAGAATTGTTCTATTTGCTGTGAGGACAAACCTTCAGTAATGATGGTTAATCTGAAATGCCACCACAAGTTCTGTTCACATTGTATGAGAATCTATGTGGAGAGGAGAATATATACATCTCAAGTCCCCGTACGATGTCCTAATCCGAGGTGCAAGTATTACATTTCCACCTCTGAGTGCAAATTTTTTCTCCCATTCACATGTTTTGAATCTCTGGAGAGAGCCTCAGAAGGCAATTTTCATTTTGACAAAATTTATTGTCCCTTTCCAAGTTGTTCTGTTCTGCTCGATCCTCATGAATGTTTATCAGCAAGGGCAAGTTCTTCAAGCCAATCAGAGAATACATGTGTTGAGTGTCCAGTCTGTCTCAGGTTTATTTGTACTCACTGTAGAGTGCCATGGCATTCTTCAATGAGCTGTGAAGAGTATCAAAATCTTCCATTGGATGAGAGAGATGCTGCTGATATTACCTCGCATCGCTTTGTTCAAAATAAACGATGGTTGCGTTGTCAGCATTGTCGGCAGGTGATTGAGCACACTCAGGGTTGCTACCACATGACATGCAGGTGTGGTCATGAGTTCTGCTACTCTTGTGGTGCGGAATATAGACATGGGCAACAGACCTGTCAATGTGCGTATTGGGAGGAAGAGTATTCTGAAGATGCAGGGACCACATCCGTTCAAGAGTCAGAACAATGGGCATGGGAGACTTTCAACTCTCTCCCTATGGTCATGGATGCATACTCAGAACAAGAACGTTCCCAGCTGGCCCTAATCCAAAGGTTCCTAGCTGGAGGCTTCAGTCTGAGTGACCATAACCTGTGTCAATCTCCTCCCCGCTGTACAGATTCTTATGTAGATGCAATGAAGGATCTTGATCAGCTTCCGTGGCTGGAGAGATTTGTTTCAGTGATAAGTGACAGCTATTATGAGGACTATATGGCATGA 1560 0.4353 MEDYAVSGGRATLDVVKEEDEDEFCSCCGDEEVLKETEELVKEDLKEELDQHSARLYFKGLSITGLSITGSEDSDSGFSGIGVVIERSAGLPTIRVQKRLDFYVDETVANYLALMAGLLVTGQNNIRRVFAFTDSQLLYDQISGEEKLEMPLVDALRERITELANKFETFSIKPSPIVDLEQAFQLAQVAIGVVSFHVPGSKLVENCSICCEDKPSVMMVNLKCHHKFCSHCMRIYVERRIYTSQVPVRCPNPRCKYYISTSECKFFLPFTCFESLERASEGNFHFDKIYCPFPSCSVLLDPHECLSARASSSSQSENTCVECPVCLRFICTHCRVPWHSSMSCEEYQNLPLDERDAADITSHRFVQNKRWLRCQHCRQVIEHTQGCYHMTCRCGHEFCYSCGAEYRHGQQTCQCAYWEEEYSEDAGTTSVQESEQWAWETFNSLPMVMDAYSEQERSQLALIQRFLAGGFSLSDHNLCQSPPRCTDSYVDAMKDLDQLPWLERFVSVISDSYYEDYMA* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00075 519 ProSiteProfiles TRIAD supradomain profile. 203 419 IPR044066 -
Pte18g00075 519 FunFam RBR-type E3 ubiquitin transferase 54 193 - -
Pte18g00075 519 CDD BRcat_RBR_unk 287 347 - -
Pte18g00075 519 Gene3D - 66 193 IPR036397 GO:0003676
Pte18g00075 519 CDD Rcat_RBR_unk 370 406 - -
Pte18g00075 519 Gene3D - 342 468 - -
Pte18g00075 519 SUPERFAMILY RING/U-box 205 276 - -
Pte18g00075 519 ProSitePatterns Zinc finger RING-type signature. 224 233 IPR017907 -
Pte18g00075 519 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 286 IPR013083 -
Pte18g00075 519 Coils Coil 35 55 - -
Pte18g00075 519 SMART ibrneu5 271 344 IPR002867 GO:0008270
Pte18g00075 519 SMART ibrneu5 354 413 IPR002867 GO:0008270
Pte18g00075 519 SUPERFAMILY Ribonuclease H-like 67 170 IPR012337 -
Pte18g00075 519 SUPERFAMILY RING/U-box 359 421 - -
Pte18g00075 519 Pfam Reverse transcriptase-like 73 173 IPR002156 GO:0003676|GO:0004523
Pte18g00075 519 FunFam RBR-type E3 ubiquitin transferase 342 467 - -
Pte18g00075 519 ProSiteProfiles Zinc finger RING-type profile. 207 254 IPR001841 -
Pte18g00075 519 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 126 472 IPR031127 GO:0004842|GO:0016567
Pte18g00075 519 Pfam IBR domain, a half RING-finger domain 363 413 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00075 Pte-Chr18 1530747 1535588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00075 52 404 C3H Transcription Factor Family AT2G19610 27.123 2.41e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00075 - - qsa:O6P43_030227 733.406