Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00066 ATGGCGTCATCGTCGACTTCGAGCAGCGGCCTCACATTCAAGTTGCATCCACTGGTAATAGTAAACATATCGGATCACTACACTAGGGTTAAGTCTCAGATGAACTCATCTCTGCCTGTGGCTATGTCTGTGTCTCCTAAGAGCAACAACAACTCTACCTGCACTGAAAGAACTTTTTCGGATACCAACACCAATGATGCCGATGGAAAATCTTCCGTTGCTCCGAGGGTGTACGGCTGTGTGGTCGGTGTGCAGAGAGGGCGTACCGTCGAGATTTTCAACAGTTTTGAGCTTCTGTATGATCATTCCACCCATTCGCTAGACCGCGCTTTCCTCGAAAAGAAGCAAGAGCTATATAAGAAGGTATTTCCTAACTTCTACATTCTCGGATGGTATTCCACTGGGACTGATGCCGAAGAATCCGATATGCACATTCACAAGGCTCTTATGGATGTCAATGAGAGCCCTGTCTATGTCCTTCTCAATCCTTCAATCAAACACGCGCAAAAGGATGTGCCTGTTACCATTTACGAAAGTGAGCTTCACGTTATTGATGGGAATCCTCAACTTATCTTTGTTCGAGCAAGCTATTCAATTGAGACGGTCGAAGCTGAACGGATATCAGTTGATCATGTTGCACATCTTAAACCGTCTGATGGAGGCTCAGCTGCTACTCAATTGGCTGCTCACCTTACTGGCATACATAGTGCCATCAAGATGCTGAATAGTCGTATTAGGGTGTTGCATCACTACCTTCTTGCAATGCACAAAGGTGATATACCTTGTGAGAATTCATTACTAAGACAAGTATCTAGTCTGCTGAGGAGATTGCCCGCAATTGAATCTGGGAAGTTTCAAGATGATTTCTTGATGGAGTACAATGACACTTTACTGATTACTTATCTGGCAATGCTAACCAATTGTTCAAGCACCATGAATGAACTGATCGATAAGTTCAACGCTGCATATGATCGACACAGTAGAAGAGGTGGACGAATTGCTTTCATGTAA 1011 0.4411 MASSSTSSSGLTFKLHPLVIVNISDHYTRVKSQMNSSLPVAMSVSPKSNNNSTCTERTFSDTNTNDADGKSSVAPRVYGCVVGVQRGRTVEIFNSFELLYDHSTHSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAEESDMHIHKALMDVNESPVYVLLNPSIKHAQKDVPVTIYESELHVIDGNPQLIFVRASYSIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLLAMHKGDIPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLITYLAMLTNCSSTMNELIDKFNAAYDRHSRRGGRIAFM* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00066 336 ProSiteProfiles MPN domain profile. 52 183 IPR037518 -
Pte18g00066 336 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 327 - -
Pte18g00066 336 MobiDBLite consensus disorder prediction 38 67 - -
Pte18g00066 336 Gene3D Cytidine Deaminase, domain 2 1 217 - -
Pte18g00066 336 SMART pad1_6 12 182 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pte18g00066 336 FunFam COP9 signalosome subunit 6 1 217 - -
Pte18g00066 336 Pfam Maintenance of mitochondrial structure and function 203 317 IPR024969 -
Pte18g00066 336 CDD MPN_CSN6 11 332 IPR033859 GO:0000338|GO:0008180
Pte18g00066 336 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 9 154 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00066 Pte-Chr18 1410249 1415070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00066 2 287 Eukaryotic Initiation Factors Gene Family AT2G39990 21.306 4.28e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00066 K12179 - qsu:112029736 546.969