Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00057 ATGGATCCCCCTGGCTCTGGTCGCTATAGTCTTCAGCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGCTGCTTTCCATGACCCACATTTTCGAGCTGATGGTTCATATGATGAAAGGAGGTATAAAAATGAAAAGTACCCAAGAGGGCACTTCTACCAAAGAGATACCTTTCACCGTGATATTATGGATAGGGATGGCCATCCATCCACAGGACCTCCTGCAGTGGGTCACTGGAGCCAATCGAAACGAAGAGGTTATAGAGAAGATTGTACATTGGACAGGGAATCTAGGCATCCTGAGAGGACTTATCATGATTCGTACTATCATTCAGATGCTTACAGAGATCACGAAAGGGATCGGTATTCAGATTTTGGTGAGTTTCAAGATGGATACGGCGTCCCTCAGAATCATGGAGATCGTGACTATGATCAGCCCAGTCATTTTGGGGGACATGAGCTTGATGATTATGCTTATGATGACTATGAGTATAGGTCCCGCAGTTCTCGTCGTCATAGGGATGATAGCCTTGAGAGTGATTATGACCATCGTCGGCCTAGTTATGATTCTGATTATGAAAGGGGCAGTAGAAGAGATGGTAATTGGAGGCAACGGGGTTCTCGTGATCGAGAACGTGACACTAGATGTTCCAGTCGGGAAATAGATCCAACTGCACGTAGGAGGCATGAAAGATCTAGGTCTCGATCTCACTCTCGTTCTCGCTCTCATTCCCATGGATATGATGATCACCCTAGGTCAAGATCTCCACAAGCTCGTAGCTATAGGGAAGACAGCTACTCCGACAGCAGATCTTGGAGAAGTGAAAAGCGAAGAGATCGGGAGGAGAAGCGCCAACGTGATAATTATTCTGTGGCACCATCAGCTACTGTTGTTGTGAAAGGCCTTTCTCAGAAGACGACTGAAGAGGATCTGTATCAAATACTTGCTGAGTGGGGACCCCTCCGGCATGTCCGAGTAATAAGAGAGAGAAACTCTGGCATATCTCGAGGATTTGCATTTATCGATTTTCCTTCTCTGGAAGCAGCTTTCGCAATGATGGGCAAGCTTGGAGATGATGGTCTTATTGTGGATGGCAGGAAGCTTTTCTTTGAATATAGTAGCAAGCCAACTAGTGGTCTCGGTGGACCCTCTGCTCAAGAGAATGGCGCAAAGTCAGGTTATAATCATAAAATCGTCGCCATGCCGTCTGATTGGAGGTGTACCATATGTGATTACATCAACTTTGCAAGACGGACATCCTGTTATCAGTGCAATGAACCAAGGACAGATGATTCTCCCCCTGCTGATGTCTCATCGTCCTACTCAGCAACCTCGGGAAGGAAAGGATCGGAAGCTGGTCCTACTCATGTTCTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAAGAAATGCTTCGCTATGAGTTCTCGAAACATGCTCCAATCAAGGATCTGCGTCTTGTCAGAGACAAGTTTACACATGTGTCAAGAGGATTTGCATTTGCCCATTTCTATTCAGTAGAGGATGCCACTAAAGCTCTTGAAGCGACCAATGGAACAACCCTTGAGAGGAATGGGCAAATCTTAAGAGTAGCATATGCAAAAAGTACACTTGGACCTGGAGGTACATCAGCTTCCCAGTCCAGCAGTCTTGCTGCTGCTGCCATTGAAGCTGCCACATTTGCTCAGCAGTATGATGCTCTTGGATGGGCGCCGAAGGAATATAATCCAGTTGACAAAGCACAAGTTGTTGGTCAACCACAAAGCAATACAGGGCCTGCTGCTCAGAAGGATTGCATGGCTCCACACTCAGGGTTTGTCTGGGATGAGGCATCTGGTTATTACTACGATGCTGCTTCTGGGTTCTACTATGATGGAAATACAGGTCTCTATTACGATGGTAATAATGGTACTTGGTATTCATATGACCATCAAACTCAGCAGTATATACCTTACACTGATCATAACAGCAACAACACAACTAGCAACCAGTCTGAACTTCCTAAGGCTTCTGATAATTCTAATAGCAAAAGGGCAATCATATCTGCACCAGCTACTACCATAACAGGTGAGAAGACTACTTTACCTGATGCAGTTCAGGCTGCCGCAGCTGCAGCAATAGCTGCCGAGAAGAAGGAAAAGGAGAAACTGAGAGAAATTAAACTGGCTTCGAGGAGCAGTATTCTGGCCAACAAGAAGAAAATGAATAATGTATTGACCATGTGGAAGCAGAGGAGTCACGAAGGGCAAACTCCACGTGTGGCTCTTGATGATAACCTGCCATCTGCAGCTTCATTTGCGGATAATAGTTCTTTCTCAACTGGGCACTCTGCAAAAACCAAATGTAGAAGTGAGGCAATGGCTGTGAAAGAGAGTAATGCACCTGATTTGAGATTTACCTCAACTGTTTCGAGTGTACAGAATTCTTTGGAGTCTGAGGTCAAGCGACAACCAGTGAGTAATAGCCTTGGTGGTTCTCTAATGGGAGTTATAAGAGGTTCCGGAAGAGGTGTAATCAAATCGGAGACTTATTCTGGATCCACAAATACTGCTACATACACTTCAGATTCTTCTTTGAGGAATTCAGCTGTACCAACAACTTCTACTCCCTTCAGGACAGATGTGTCTGCTTTGGGCTCATACACACCATCTATGTCTAATGGAAGTGGCAAGAGGAGGTTCTCTGAAACACCTGTAGGTTCTGCATCTACTATTAGGGAACAACCTCATACTTCTTATCGGGACCGAGCTGCTGAGAGAAGGAGCTTGTATGGGTCATCATCAACTGTTGGAAATGACACATCAGATGTTGAATTTCAGGATTCAAATCGAGATCGTGCACTTAGGAAGGGCTCTGGGGATATGCCTTTTCCTCCTGGTGTTGGTGGGGGGCATGTGTTTAGAGAAGCTGATACCGATGACTATGAGGTCATTACTGCTGACAAAGCAATTGATGAGAGCAATGTCGGAAACCGGATGCTACGAAGCATGGGCTGGCATGAAGGCTTGGTATCGTTTCCTCCTTTATTCTCTAATGCAATATTGTGA 3051 0.4546 MDPPGSGRYSLQQGWDNNSALEGYAAFHDPHFRADGSYDERRYKNEKYPRGHFYQRDTFHRDIMDRDGHPSTGPPAVGHWSQSKRRGYREDCTLDRESRHPERTYHDSYYHSDAYRDHERDRYSDFGEFQDGYGVPQNHGDRDYDQPSHFGGHELDDYAYDDYEYRSRSSRRHRDDSLESDYDHRRPSYDSDYERGSRRDGNWRQRGSRDRERDTRCSSREIDPTARRRHERSRSRSHSRSRSHSHGYDDHPRSRSPQARSYREDSYSDSRSWRSEKRRDREEKRQRDNYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIRERNSGISRGFAFIDFPSLEAAFAMMGKLGDDGLIVDGRKLFFEYSSKPTSGLGGPSAQENGAKSGYNHKIVAMPSDWRCTICDYINFARRTSCYQCNEPRTDDSPPADVSSSYSATSGRKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFAHFYSVEDATKALEATNGTTLERNGQILRVAYAKSTLGPGGTSASQSSSLAAAAIEAATFAQQYDALGWAPKEYNPVDKAQVVGQPQSNTGPAAQKDCMAPHSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGTWYSYDHQTQQYIPYTDHNSNNTTSNQSELPKASDNSNSKRAIISAPATTITGEKTTLPDAVQAAAAAAIAAEKKEKEKLREIKLASRSSILANKKKMNNVLTMWKQRSHEGQTPRVALDDNLPSAASFADNSSFSTGHSAKTKCRSEAMAVKESNAPDLRFTSTVSSVQNSLESEVKRQPVSNSLGGSLMGVIRGSGRGVIKSETYSGSTNTATYTSDSSLRNSAVPTTSTPFRTDVSALGSYTPSMSNGSGKRRFSETPVGSASTIREQPHTSYRDRAAERRSLYGSSSTVGNDTSDVEFQDSNRDRALRKGSGDMPFPPGVGGGHVFREADTDDYEVITADKAIDESNVGNRMLRSMGWHEGLVSFPPLFSNAIL* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00057 1016 Gene3D - 259 398 IPR012677 -
Pte18g00057 1016 SMART zf_4 404 428 IPR001876 -
Pte18g00057 1016 MobiDBLite consensus disorder prediction 54 112 - -
Pte18g00057 1016 MobiDBLite consensus disorder prediction 83 112 - -
Pte18g00057 1016 MobiDBLite consensus disorder prediction 54 68 - -
Pte18g00057 1016 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 457 537 IPR000504 GO:0003723
Pte18g00057 1016 MobiDBLite consensus disorder prediction 142 230 - -
Pte18g00057 1016 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 357 IPR000504 GO:0003723
Pte18g00057 1016 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 459 525 IPR000504 GO:0003723
Pte18g00057 1016 SUPERFAMILY RNA-binding domain, RBD 454 541 IPR035979 GO:0003676
Pte18g00057 1016 ProSitePatterns Zinc finger RanBP2-type signature. 406 425 IPR001876 -
Pte18g00057 1016 PANTHER RNA-BINDING PROTEIN 195 1003 - -
Pte18g00057 1016 SMART rrm1_1 297 372 IPR000504 GO:0003723
Pte18g00057 1016 SMART rrm1_1 458 533 IPR000504 GO:0003723
Pte18g00057 1016 CDD RRM1_RRM2_RBM5_like 455 535 - -
Pte18g00057 1016 MobiDBLite consensus disorder prediction 842 909 - -
Pte18g00057 1016 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 376 IPR000504 GO:0003723
Pte18g00057 1016 CDD OCRE_SUA_like 602 653 IPR035623 -
Pte18g00057 1016 MobiDBLite consensus disorder prediction 426 454 - -
Pte18g00057 1016 SUPERFAMILY Ran binding protein zinc finger-like 398 432 IPR036443 -
Pte18g00057 1016 MobiDBLite consensus disorder prediction 842 942 - -
Pte18g00057 1016 Gene3D - 399 432 - -
Pte18g00057 1016 MobiDBLite consensus disorder prediction 923 938 - -
Pte18g00057 1016 SUPERFAMILY RNA-binding domain, RBD 290 393 IPR035979 GO:0003676
Pte18g00057 1016 MobiDBLite consensus disorder prediction 242 289 - -
Pte18g00057 1016 MobiDBLite consensus disorder prediction 426 450 - -
Pte18g00057 1016 Pfam OCRE domain 604 653 IPR041591 -
Pte18g00057 1016 Gene3D - 437 561 IPR012677 -
Pte18g00057 1016 MobiDBLite consensus disorder prediction 652 677 - -
Pte18g00057 1016 ProSiteProfiles Zinc finger RanBP2 type profile. 402 431 IPR001876 -
Pte18g00057 1016 MobiDBLite consensus disorder prediction 125 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00057 Pte-Chr18 1233070 1242049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00057 295 521 Eukaryotic Initiation Factors Gene Family AT2G36660 22.835 9.59e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00057 K13094 - gmx:100787998 1252.65