Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00053 ATGGGTCGCATTCCATGCTGTGAGAAAGACAATGTCAAGAGGGGGCAATGGACACCAGAGGAAGACAACAAGCTTTCTTCCTACATCGCTCGATATGGCACTCGCAACTGGGGACACATTCCCAAAAATGCTGGTCTTCAGAGATGTGGAAAGAGCTGCAGGCTAAGATGGACTAATTACCTTCGACCTGATCTGAAACATGGCGAGTTTTCAGATGCCGAGGAACAAACCATTATGAAAGTTCACTCCATCGTTGGCAACCGATGGTCACTTATAGCGGCACAGCTACCTGGACGAACTGACAATGATGTCAAAAATCACTGGAATACCAAACTGAAGAAGAGACTTTCAGGGATGGGCATTGACCCTGTTACCCACAAGCCATTCTCTCACCTTATGGCTGAGATTGCTACCACGTTAGCACCTCCACACGTGACTCACCTTGCAGAAGCAGCACTCGGCTGTTTCAAAGATGAAATGCTCCATCTCCTTACCAAGGAGCGCATTGACTTCCAGTTCCAACCATTTCAAGCACCACTAGGAAACTCAACTCCCGCTAATACTACTGGTAAACAGCATGAAAAAGATGACACAATAGAGAAACTGAAGCTGGGTCTATCAAAATCTATACAACAATCTGATCTAATACCACAAAACAAAGCTTGGGATAACTCCGCACATACCAGCACTCATTTTGCAGGGACTTGCAGTATTTTTCCCACGATGTTTGGTTTTGAGTTTGGCCCAGTTTTTGACAATGGAGGAGTTGGATCACCGTGGAATCAGAGCATGCGTAGCGAAAGCACATGCACGGCAGGGGAGCAGCATGTCCAGTTGCACCAAAATCTCGATGAAGAAATTGCAGATGAATCTGAAGGTGTGAAAGAGATCAGAAATGGGTCCAACATGTTCAATGCAGACTGCGTCTTGTGGGATTTATTAGCATCTGATGATCTAATGAACCCCATAGTGTAA 975 0.4564 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIARYGTRNWGHIPKNAGLQRCGKSCRLRWTNYLRPDLKHGEFSDAEEQTIMKVHSIVGNRWSLIAAQLPGRTDNDVKNHWNTKLKKRLSGMGIDPVTHKPFSHLMAEIATTLAPPHVTHLAEAALGCFKDEMLHLLTKERIDFQFQPFQAPLGNSTPANTTGKQHEKDDTIEKLKLGLSKSIQQSDLIPQNKAWDNSAHTSTHFAGTCSIFPTMFGFEFGPVFDNGGVGSPWNQSMRSESTCTAGEQHVQLHQNLDEEIADESEGVKEIRNGSNMFNADCVLWDLLASDDLMNPIV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00053 324 FunFam Transcription factor RAX3 7 67 - -
Pte18g00053 324 CDD SANT 69 112 IPR001005 -
Pte18g00053 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pte18g00053 324 SMART sant 66 114 IPR001005 -
Pte18g00053 324 SMART sant 13 63 IPR001005 -
Pte18g00053 324 PANTHER F14D16.11-RELATED 1 320 - -
Pte18g00053 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte18g00053 324 CDD SANT 17 61 IPR001005 -
Pte18g00053 324 Gene3D - 68 128 - -
Pte18g00053 324 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Pte18g00053 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte18g00053 324 Gene3D - 6 67 - -
Pte18g00053 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte18g00053 324 FunFam transcription factor MYB80 69 129 - -
Pte18g00053 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pte18g00053 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00053 Pte-Chr18 1213779 1215088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00053 1 171 MYB Transcription Factor Family AT5G56110 86.550 1.91e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte18g00053 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00053 K09422 - qsu:111994049 520.776