Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00048 ATGGATGGTGGTATGCGATCAGGTGGCCCTTCTGGGGTTTTTGTGAAGAATAGGAGCTCTTCAGGTTGTTTAATTGTTAGAAAGAAAGCAGATGGGGCGGGTGGTGCGGTTGGTTCTTCAAACACTAGAGGTTTCATGGACCTGAGGAAGGAGAAGAAAAGACCTAGTGCTGCTATAAGTGATTCTGATTCAAGTGATGAGTTGGTATTACCTTCTCATAGGCGGGTTGGTCCTGAAACCGTTCGAGGCTGCAATGGTTTGGCTCCTTATGAAAACGGTAATATAGAAGATCGCGGAATTTCCCGAAAGCGTGAGAGGTTGGAGCGAATTAGGCGTGACGAAAATATGTTTGGTATGCGTGCTTTTGAGGGACGGGAAAGGGGACGGAAGAGGGGCAAATTAGATGTTGTTGCTGTTGGTGAATATGACGGCATTGATGGAGATCAGGTTAACATGCGAAGAAGACATTTCGATGATGGTAGAGCTGAATTTGGTGAGAGAAGGCTTATGGGGACGATGTATGTTGGTCGAGGTGGCTTCGATGGGGAATATGAATCTGGTCCAGGCAGACACATGATCGACCAGGGGAGACACCTTTATCCCGATAGGGAAAGTGGTTTACATTTTGGAGACAGTGTTGATCGAAGTAGGTTGAAAATGAATATGGAAGGAGCTGAGGTTCCTTTACCTGTGTTAAGGGAGCAGTACATGGATCGACCTGATGAAGCAATTAGAGTTCAAGGTAAAAACGGTGTCCTTAAGGTGATGGTTAACAAGAAGAAGATGGTTGGTGGGCCACCACTAGATTATGACCGGTTCAGAGCTGTTGAAAGCAGGCAGAGCTTGAGGACAGAAAACAGCTCCGGGAGAAACATGTATATGCATCCTTCGGCATACCCAAAACTTAAACATGTCGATAGACCAGGTACAGTCCTCAGGGAAGAGAAAAATACATTGATTTCGAAGAGACTAATGTCCAGTAAGGAAAGTGACGAGGCTGATCGGAATTCAGATAATAGTGACACATCACTGAAGCTGGGATCAAAGACTGTTCATGCGCAGAAGTCTATCAAAAAGAAAAGTTATGAGGACGAACCAAAATTGAAGAATGTTCAACCTCGCAAAGTTGTGAAGAGGATAACTTCTGAAGATGAACAAATTCCTGCGCAAGAAAAGCTTGTGCCAGGAAGCACGAAAGAAGGAAAAGTTAAACGTGGCAGTGGTACTGAGAAACAAAAGCTACGTGAACGTATTAGAGCAATGCTTCTTACTGCAGGGTGGACGATAGATTATCGACCTAGAAAGAATAGAGATTACCTAGATGCAGTATACATTAATCCCAGTGGAACAGCATACTGGTCAATAATCAAGGCCTATGAAGCACTGCAAAAGCAAATGAATGAAGATAAGGAAGAGGTTAAGCTAAGCGTTGATTCTGGCCCCTCATTTCCACCTATTTCTGATGAGGCACTCAGGCAATTAACAAGGAAAACTCGGAAGAAGTTGGAGAATGAAATGAAGAAAAAGAGAAGGAGTGAAGGTGATAGTGACAGTGCCAAAGAAGCTCATCATAATAAGCATGACGTGGATGGTTTGGATAGTGATAGCCAGGAAGAGAGATTAAGCTCTTTCATTAAGCAGGGGAATAACCCAATGAAAAGTAAAACAAATGAAAATGGTATTGGCAGTTCAAATTCTAGATGTCAGATTTTTTCTGACGAATTAAATGATTGTGCAGTAAAGCCATCTTTTGGATCTGATTCCCATTTTCTACATGGAAGCAAGAGTAGAAAACATAGCAGATGTGCTTTGTTGGTCCGTGGCTCAAATTACCAATCAAATCCAGAAACTGATGACTTTGTTCCATATACTGGAAAACGAACTATTCTTTCATGGCTCATTGATTCTGGCACAGTGGAACTAAGTGAAAAGGTGCTATATTGTCGACGAAAGCGTGTAATGCTAGAGGGTTGGATCACAAGAGATGGCATTCATTGTGGTTGCTGTAGTAAAATACTCACAGTTTCAAAGTTTGAGATTCATGCTGGAAGCAAATTGCGGCAACCATTTCAAAACATATATCTGGAATCTGGAATTTCTCTCTTGCAGTGCCAGATTGATGCATGGAATAGACAAGAGGGTTCTGAAAAAATAAGATTCCACTCTGTAGATGTCGATGGAGATGATCCAAATGATGATACTTGTGGCATTTGTGGAGATGGCGGGGATTTAATTTGCTGTGATAGTTGCCCCTCGACATTTCATCTGAATTGCTTGGGCATTGAGGTGTTTCCACCTGGGGAATGGCACTGCCCAAACTGTACTTGTAGATTTTGTGGACTCACCCGTGGAACTTTCAACCAAGATGATAATGTGTCCATACTCTGCACATGCCACTTGTGTGAGAAAAAATATCATGAATCCTGTATCAAGGAGATATTTTCATCTCCAGTTGATTCCAATATTTCAGATCCTGGCTTTTGTGGAAAAGATTGTAAAGAGCTTTTTGAGCGCCTAAAGAAGTATCTCGGAACCAAACATGAATTGGATGCAGGCTTTTCTTGGTCTCTTATCCGTAAATCTGATGAAGACTCAGATGCTGCTTTTAGAGGAATATCTCAACGCGTGGAGTCTAACTCTAAGCTAGCAGTGGCAGTGACTGTGATGGATGAATGCAACAAGAAAAATATATCATCAAACTTCTATCGATTAAGTTACAGTGGCTTTTACACTGCTGTTCTGGAGAAAGGTGATGAAATTATTTCTGCAGCTTCTATCAGGTTCCATGGTCCTAAATTGGCAGAAATGCCGTTCATTGGAACTCGCCAAATGTATAGGCATCAAGGGATGTGTCGACGACTCTTTTCTGCCCTTGAATTGGCACTGTGCTCTCTCAAGGTTGAGAAACTGATTATTCCAGCGACTGTGGAGGTCATGCACATATGGACAGAAAGTTTTGGTTTCACCCCTTTGGAGGAATCCCTCAAGAAAGATATGAGATCAATGAACATTTTGGTTTTTCCTGGAGTAGATATGTTAGAGAAGCGATTGAGTGCAGTCGAAAAACTAGAGGGGAGTGCTCCTACGTCAGGACATAATCATTTGGTCAGGTCAGATGTGGTAAGTAAATCTGATATAGAGTCCCCTTCTGGCCAAGATGCTCATGGATGTGATGAAGACAGTTCTCATCATTCTAATGAGAGAACTGATGAAGGTGCTGCCTCTAACTCTGATTCCCAAAGTGAAGGTGTGGTCGCAAATGCTGCCTCCATCATTAGTGATTCCTATAAAGGTTCTCACAAGTCTCAGAATCCAGTTACAGCTGATGGAACTCTTTATTCCAAATCGGGGGAAATGCTAGTTGGTTCTGCTTCTGAAAAGCAATGTATGTCTGGCTCCAACAGTGGCCATGCTGCCGTTGAGAAGGCAAAGCTAGTAACGAGTTCTCCTGTCAAGGATAATGATTTGCATTTTTCTCCCCAACATCATGTTGCTTCTTTAAATGATACCGCAATGAATTTGTCAGATGACCTTGAGGCTTCAGTTTGGCAAAAAGAAACTGCATCTTCGGAGCAGAAGGTCGTCGAATCTGATTCTGACTGTAAAACTCGGCCAGCCTCTTCTTCAAAAGATGATTCCCTGGATACTAGAAATGACGGAAATTCTGATTCTCAAGTAGGTGCATGCCCTGAGCCTAATAATGAGAACACCCTTGCAGTTGGAGCAGTTCCGTCATCTGGGCACATATATTCAGATAACATTACCAAGAATGTGGATGAGGAGACAAAAGTTTCTGGTTGTACTGTCAGAGTTGGTGATGAGACTCCAGTGCATATGGGATCTGATTTAAATGTTGCGATATCTGAAGATGCAATTAAAATGCATGATGATTCAGAAGCAACATCTTCTGAAACACATTATGAGGAAAATATGGTTCATGCATTTCCCGGTGACTCTGATGGAACCGACACATTGACGTGA 3981 0.424 MDGGMRSGGPSGVFVKNRSSSGCLIVRKKADGAGGAVGSSNTRGFMDLRKEKKRPSAAISDSDSSDELVLPSHRRVGPETVRGCNGLAPYENGNIEDRGISRKRERLERIRRDENMFGMRAFEGRERGRKRGKLDVVAVGEYDGIDGDQVNMRRRHFDDGRAEFGERRLMGTMYVGRGGFDGEYESGPGRHMIDQGRHLYPDRESGLHFGDSVDRSRLKMNMEGAEVPLPVLREQYMDRPDEAIRVQGKNGVLKVMVNKKKMVGGPPLDYDRFRAVESRQSLRTENSSGRNMYMHPSAYPKLKHVDRPGTVLREEKNTLISKRLMSSKESDEADRNSDNSDTSLKLGSKTVHAQKSIKKKSYEDEPKLKNVQPRKVVKRITSEDEQIPAQEKLVPGSTKEGKVKRGSGTEKQKLRERIRAMLLTAGWTIDYRPRKNRDYLDAVYINPSGTAYWSIIKAYEALQKQMNEDKEEVKLSVDSGPSFPPISDEALRQLTRKTRKKLENEMKKKRRSEGDSDSAKEAHHNKHDVDGLDSDSQEERLSSFIKQGNNPMKSKTNENGIGSSNSRCQIFSDELNDCAVKPSFGSDSHFLHGSKSRKHSRCALLVRGSNYQSNPETDDFVPYTGKRTILSWLIDSGTVELSEKVLYCRRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLESGISLLQCQIDAWNRQEGSEKIRFHSVDVDGDDPNDDTCGICGDGGDLICCDSCPSTFHLNCLGIEVFPPGEWHCPNCTCRFCGLTRGTFNQDDNVSILCTCHLCEKKYHESCIKEIFSSPVDSNISDPGFCGKDCKELFERLKKYLGTKHELDAGFSWSLIRKSDEDSDAAFRGISQRVESNSKLAVAVTVMDECNKKNISSNFYRLSYSGFYTAVLEKGDEIISAASIRFHGPKLAEMPFIGTRQMYRHQGMCRRLFSALELALCSLKVEKLIIPATVEVMHIWTESFGFTPLEESLKKDMRSMNILVFPGVDMLEKRLSAVEKLEGSAPTSGHNHLVRSDVVSKSDIESPSGQDAHGCDEDSSHHSNERTDEGAASNSDSQSEGVVANAASIISDSYKGSHKSQNPVTADGTLYSKSGEMLVGSASEKQCMSGSNSGHAAVEKAKLVTSSPVKDNDLHFSPQHHVASLNDTAMNLSDDLEASVWQKETASSEQKVVESDSDCKTRPASSSKDDSLDTRNDGNSDSQVGACPEPNNENTLAVGAVPSSGHIYSDNITKNVDEETKVSGCTVRVGDETPVHMGSDLNVAISEDAIKMHDDSEATSSETHYEENMVHAFPGDSDGTDTLT* 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00048 1326 MobiDBLite consensus disorder prediction 30 69 - -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 1183 1236 - -
Pte18g00048 1326 PANTHER PHD FINGER PROTEIN 12 352 1135 IPR042163 GO:0003714|GO:0045892
Pte18g00048 1326 MobiDBLite consensus disorder prediction 279 370 - -
Pte18g00048 1326 ProSiteProfiles Zinc finger PHD-type profile. 732 777 IPR019787 -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 1052 1071 - -
Pte18g00048 1326 Pfam PHD-finger 735 776 IPR019787 -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 1031 1049 - -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 45 60 - -
Pte18g00048 1326 CDD PHD2_CHD_II 735 774 - -
Pte18g00048 1326 SMART PHD_3 734 775 IPR001965 -
Pte18g00048 1326 SMART PHD_3 778 833 IPR001965 -
Pte18g00048 1326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 822 IPR013083 -
Pte18g00048 1326 Pfam Tify domain binding domain 657 707 IPR032308 -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 541 563 - -
Pte18g00048 1326 ProSitePatterns Zinc finger PHD-type signature. 735 774 IPR019786 -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 300 339 - -
Pte18g00048 1326 SUPERFAMILY FYVE/PHD zinc finger 718 775 IPR011011 -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 472 563 - -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 492 540 - -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 356 370 - -
Pte18g00048 1326 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 904 996 IPR016181 -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 1024 1084 - -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 1296 1326 - -
Pte18g00048 1326 Coils Coil 492 512 - -
Pte18g00048 1326 MobiDBLite consensus disorder prediction 1191 1218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00048 Pte-Chr18 1090084 1097875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00048 3 1050 PHD Transcription Factor Family AT4G14920 45.630 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte18g00048 TDBD 6.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00048 - - qsa:O6P43_003370 1392.1