LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte18g00042	ATGGGTTGCATGTGTTCAAAGGGTACTTTCGCAAATGATTATGATTCTAAAAGTCATAGGAAAAGCAAAGATGTAAAGGCGAAAAATTCTTCTAAGCAAATAGGTCCTTTTTTAAGGGCAGAGGAATCACTGGCTGAAGTTGATGGGACTGGAAATGATGCTATTGCTAGATTGGTAGCTGATCCAACTAGGGATGGGATTACAGGTTCTAATGGTTCATCACATAAGGGGGCCAAGAAAGCAACTACAAAAAAGGCATCCAAATCGTTGGTTCAAAGACGTCCGACTGTGGATTCGTGGTCAATTAGAGAACAAGGGCAACCCAGGATAGTGAGTCTGACCAAAGGCGAAACAGGAGCACAAATTGTTGCTGGATGGCCTTGTTGGCTGGCTTCTGTTGCAGGAGAAGCCATTAATGGATGGGTGCCTCGCAAAGCAGACTCTTTTGAGAAAATGGACAAGATAGGACAAGGCACTTACAGTAGTGTATATAAAGCCCTTGATCTTGAAACAGAAAAAATAGTGGCATTGAAGAAGGTCAGATTTGCCAATATGGATCCAGAAAGTGTTAGGTTTATGGCAAGAGAAATTCTAATTCTAAGGAGGCTTGACCATCCAAATATCATAAAACTTGAAGGCTTGATTGCTTCGAGAGCCTCTGGCAGTTTGTACCTCATATTTGATTACATGGAGCATGATCTTTCAGGTCTTGTAGCCACGCCTGACATCAAGTTCACAGAAGCACAGATCAAATGTTATATGCAGCAACTGCTTCTTGGTCTTGAGCATTGTCATAGTCATGGTATTCTTCACCGCGACATCAAGTGCTCTAATCTTCTCATTGACAATAACAGCAATCTAAAGATTGCTGATTTTGGCCTAGCAAACTTTCTCCAACCCAATCAGGAACAACCATTGACAAATCGGGTAGTCACGTTGTGGTACAGACCACCAGAACTATTGCTTGGAGCTACAAATTATGGGGTGTCTGTAGATTTGTGGAGTAGTGGTTGCGTTCTTGCGGAGTTATTTACTGGGAAGCCTATACTGCCTGGACGAACAGAGGTAGAGCAACTTCACAGAATTTTTAAATTATGTGGATCACCGTCTGAAGAGTACTGGAAGAACTCAATATTATCTAATACAACAATTTTCAAACCTCAACATCATTATGAGCGTTGCATTACTGAGACATTCAAGGATCTTCCTTCAACAGCATTGAACCTCTTGGAGGTCCATCTTGCTGTAGAACCTTCACATCGTGGGACAACTTCTTTAGCTCTTAAAAACGAGTTCTTCAGAACACAGCCTCTTCCTTGTGCTCCCTCAAGCTTGCCAAAATACCCTCCGAGTAAAGAACTCAACACCAAGTTCCGAAGACAGCAATCAAGAAGGCGGAGAGCTGCTTCTGTTATAGGGCCTGAACACAAATCAACTTGTACAAGTTTGAAAGAATCTGAAAACATGCAAGCCCCTGGAGCTAATGCGAAGTGGTCGACACTTGTAAAGAGACAAGGGCAGGTTTATCCAAGGAATACTGGTGAGCATCGTTCCAGCTCCCCTGTTGAATCCTCTAAAGGAGACATGAATCAAGAATTTTACATGTGTCGGGGACCTGCAGGAAAATTATCTGGACTTTCCAATTCAGTTTCAGTTCCTGGCGATTCATATAATGTTAGTGAAGATACTAGTGTCCATTTTCATCCAACATGCAACCGCGAGGATGATACTGAGTCTTCACAGAACTTGTTAGATAAACAAAATTTATCAAATAAAAAGCCGGCAAAGACATCTTTGGACCCTGCCATGGGCCGCATACATTTTTCGGGACCTCTAATCCTTCCTGGTGGAAATCTTGATGAGATGCTGAAGGAGCATGAGAAAAGGATACAAGATGCAGTACGCAAAGCTCGTGTAAACAAGGTCATGCCGAAGTAA	1938	0.4241	MGCMCSKGTFANDYDSKSHRKSKDVKAKNSSKQIGPFLRAEESLAEVDGTGNDAIARLVADPTRDGITGSNGSSHKGAKKATTKKASKSLVQRRPTVDSWSIREQGQPRIVSLTKGETGAQIVAGWPCWLASVAGEAINGWVPRKADSFEKMDKIGQGTYSSVYKALDLETEKIVALKKVRFANMDPESVRFMAREILILRRLDHPNIIKLEGLIASRASGSLYLIFDYMEHDLSGLVATPDIKFTEAQIKCYMQQLLLGLEHCHSHGILHRDIKCSNLLIDNNSNLKIADFGLANFLQPNQEQPLTNRVVTLWYRPPELLLGATNYGVSVDLWSSGCVLAELFTGKPILPGRTEVEQLHRIFKLCGSPSEEYWKNSILSNTTIFKPQHHYERCITETFKDLPSTALNLLEVHLAVEPSHRGTTSLALKNEFFRTQPLPCAPSSLPKYPPSKELNTKFRRQQSRRRRAASVIGPEHKSTCTSLKESENMQAPGANAKWSTLVKRQGQVYPRNTGEHRSSSPVESSKGDMNQEFYMCRGPAGKLSGLSNSVSVPGDSYNVSEDTSVHFHPTCNREDDTESSQNLLDKQNLSNKKPAKTSLDPAMGRIHFSGPLILPGGNLDEMLKEHEKRIQDAVRKARVNKVMPK*	646

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte18g00042	645	ProSiteProfiles	Protein kinase domain profile.	149	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte18g00042	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	269	281	IPR008271	GO:0004672\|GO:0006468
	Pte18g00042	645	FunFam	probable serine/threonine-protein kinase At1g54610	136	231	-	-
	Pte18g00042	645	MobiDBLite	consensus disorder prediction	11	33	-	-
	Pte18g00042	645	MobiDBLite	consensus disorder prediction	475	527	-	-
	Pte18g00042	645	FunFam	probable serine/threonine-protein kinase At1g54610	232	472	-	-
	Pte18g00042	645	ProSitePatterns	Protein kinases ATP-binding region signature.	155	178	IPR017441	GO:0005524
	Pte18g00042	645	PANTHER	CELL DIVISION PROTEIN KINASE	147	439	-	-
	Pte18g00042	645	Pfam	Protein kinase domain	149	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte18g00042	645	Gene3D	Transferase(Phosphotransferase) domain 1	232	473	-	-
	Pte18g00042	645	SUPERFAMILY	Protein kinase-like (PK-like)	143	440	IPR011009	-
	Pte18g00042	645	MobiDBLite	consensus disorder prediction	63	98	-	-
	Pte18g00042	645	MobiDBLite	consensus disorder prediction	567	581	-	-
	Pte18g00042	645	MobiDBLite	consensus disorder prediction	460	528	-	-
	Pte18g00042	645	MobiDBLite	consensus disorder prediction	565	603	-	-
	Pte18g00042	645	CDD	STKc_CDK9_like	149	433	-	-
	Pte18g00042	645	Gene3D	Phosphorylase Kinase; domain 1	136	231	-	-
	Pte18g00042	645	SMART	serkin_6	149	433	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte18g00042	Pte-Chr18	865783	871977	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte18g00042	141	470	Core Cell Cycle Gene Families	AT5G10270	49.138	1.48e-108	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pte18g00042		Pkinase	6e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte18g00042	-		-	qsa:O6P43_031464	739.954