Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00030 ATGGGGAGCACGAAGATGAAGCTCTTATTACCGTTAATGATAAGTCTGTTTTGTACTTCACATCTGATTTTAACATCTTCAGCCCTTACCAACACATCCACATGTCCCATGGACTTGAATTATGTCCTGAGAATCCCATGGAACTCCACAGACTGCCAAAATTTCCACCCTCCACCTTCCCAGAACAACGCAGACAAACCATGCTGTCAAACTCTGCTTTCTCTTTTTGGCATAGCACTTGCACAACATCTAAGGGAAACATCTCTCTTCCAACTCCCTGATTCCAGTACATCCATTGCTTGCCTACAGAACTTCCAGTCCTTGCTCATCTCCCTTTCTCTCCCTCATGATCTCGTGTCAAATTGCTTTGACCCTTCTCAATTTGTGATCACCTCAAACGTCTGTGCCCATATTAAAACGTCGCAAGATTGGGTTAACAAGCTTGGGACTGACACAGCTCTCGACACGGCCTGCAAACCAGACCTCACCGATCTTACCCTCTGCGATGCCTGTGTATCTGCAGGATTCAAGGCTCAGCAAACGTTGACTTCGATAGATGGTAATAGCTCTCATGCTAGAAATTGCTTCTATTATGGTATTTTATATGCTGCTGGAATTGTGAATAAGTATGGTCCGGAGAGTAATGGTGCCGTGACTTGTATATTCGGTATGTCCGTTCTTTCCCCAGCGAGGTCTGAGGGTCACGGCCATACTGCTCTTGCTTTCGGGCTGACTGGAGCAGTGGTTGCGATTTTAGCTATGTCGTCTCTGTTGGGGCTATATTTCTGGTACAGAAAGTGGAGGAGGAAGAAGCTTGGGGATTTGCAGTATATTTTTGATGTAGAAGAACAAGGTTCTAGGCCGAGACTTAGACCCAATTCGGTATCTATTTGGTTCAAAATTGAGGAGCTTGAGAAAGCTACTAATAATTTTTCAGAGAAGAATTTTATTGGACGAGGAGGGTTTGGCATAGTCTACAAAGGTTTTTTGTCTGATGGAAGTATGGTTGCTGTGAAGAGAATCATAGAATCAGATCTTGAGAGTAACGCTGAGTTTTGCAATGAGGTAGAAATCATTAGCAATTTGAAGCACCGAAATCTCGTTCCGCTAAGAGGGTGTTGTGTTGTTGAAGGAGGTACTCATAGTTATGCTTATGATGACAGAGGAAGTAATAGGTATCTTTTATATGATTACATGCCAAATGGAAACCTTGACGACCATCTGTTTGCATCAATGGCTAATCAAAGCTTAAAGAAACCGTTGACATGGCCTCAGAGGAAAGGCATAATCTTGGATGTGGCTAGGGGGCTGGCTTATCTACACTATGGTGTGAAGCCGGCAATTTATCACAGAGATATCAAACCAACTAACATACTATTAGATGCAGATATGAGAGCTAGAGTTGCAGATTTTGGGCTTGCAAGACAAAGTAGGGAAGGTCAATCTCATCTCACGACCAGAGTGGCTGGAACTCATGGGTACCTAGCCCCAGAATATGCACTATACGGTCAGTTGACTGAGAAAAGTGATGTATACAGCTTTGGTGTTGTAGTTTTGGAGATTATGTGTGGGAGAAAAGCTCTAGACTTGTCATTATCCGGATCCCCACGAGCATTTCTAATCACAGATTGGGCTTGGTCATTAGTGAAAGCTGGGAAAATAGAAGAGGCCTTGCATGAGTCCTTGCTTAAAGATGGGATTGGGGAGTCTTGTTCAAATCCGAAGAGCATCATGGAGAGATTCTTGTTGGTAGGAATTCTTTGTGCTCATGTAATGGTGGCTTTGAGGCCAACAATCTCGGATGCTCTCAAGATGCTGGAAGGAGATATTGAGGTTCCATCAATCCCTGATCGACCAACACCTCTTAGCCACCCTTCTCTCTATGGTGATGGCAATAACTCCGGTCTATCACCAGCATTAAGTGGACCAAAATTGCATAGTGGAGATATGCTCAGGTAA 1959 0.438 MGSTKMKLLLPLMISLFCTSHLILTSSALTNTSTCPMDLNYVLRIPWNSTDCQNFHPPPSQNNADKPCCQTLLSLFGIALAQHLRETSLFQLPDSSTSIACLQNFQSLLISLSLPHDLVSNCFDPSQFVITSNVCAHIKTSQDWVNKLGTDTALDTACKPDLTDLTLCDACVSAGFKAQQTLTSIDGNSSHARNCFYYGILYAAGIVNKYGPESNGAVTCIFGMSVLSPARSEGHGHTALAFGLTGAVVAILAMSSLLGLYFWYRKWRRKKLGDLQYIFDVEEQGSRPRLRPNSVSIWFKIEELEKATNNFSEKNFIGRGGFGIVYKGFLSDGSMVAVKRIIESDLESNAEFCNEVEIISNLKHRNLVPLRGCCVVEGGTHSYAYDDRGSNRYLLYDYMPNGNLDDHLFASMANQSLKKPLTWPQRKGIILDVARGLAYLHYGVKPAIYHRDIKPTNILLDADMRARVADFGLARQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSLSGSPRAFLITDWAWSLVKAGKIEEALHESLLKDGIGESCSNPKSIMERFLLVGILCAHVMVALRPTISDALKMLEGDIEVPSIPDRPTPLSHPSLYGDGNNSGLSPALSGPKLHSGDMLR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00030 652 SMART serkin_6 311 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g00030 652 FunFam Receptor-like serine/threonine-protein kinase At4g25390 278 398 - -
Pte18g00030 652 Pfam Protein kinase domain 312 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g00030 652 SUPERFAMILY Protein kinase-like (PK-like) 291 607 IPR011009 -
Pte18g00030 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Pte18g00030 652 Pfam SPARK 31 196 IPR043891 -
Pte18g00030 652 CDD STKc_IRAK 317 608 - -
Pte18g00030 652 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Pte18g00030 652 Gene3D Transferase(Phosphotransferase) domain 1 399 613 - -
Pte18g00030 652 PANTHER OS01G0750732 PROTEIN 50 614 - -
Pte18g00030 652 MobiDBLite consensus disorder prediction 633 652 - -
Pte18g00030 652 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 399 614 - -
Pte18g00030 652 ProSiteProfiles Protein kinase domain profile. 311 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte18g00030 652 Gene3D Phosphorylase Kinase; domain 1 281 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00030 Pte-Chr18 738094 741410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00030 28 653 Receptor kinase-like Gene Family AT1G11050 66.667 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Pte18g00030 Pkinase 6.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00030 - - qsa:O6P43_012218 965.681