Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00023 ATGCTCAAGGAAAAGTATTATCAGGCTTTTGCTTCATTTGCTGGATGTAACATGGCTATGGCCATTGCTGCTTCTGCCCTTTGTGCCTATATTGCTCCTGCTGCATCAGGCTCTGGCATCCCCGAGGTCAAGGCCTACCTCAATGGCATTGATGCACACTCTATTCTGGCTCCAAGTACACTCTTAGTTAAGATTTTTGGTTCTATCTTTGGAGTTGCTGGTGGATTTGTAATGGGAAAAGAAGGGCCTATGGTACACACTGGTGCTTGTGTGGCTTCTTTACTTGGACAGGGTGGATCTCGCAAATGTAGTCTCACATGGAAATGGCTCAGATACTTCAAGAATGATCGAGATCGCCGGGATTTGATCACCTGTGGGACAGCTGCTGGAGTGGCAGCAGCATTCCGGGCCCCTGTTGGCGGTGTTCTTTTTGCGCTTGAAGAAGTAGCTTCATGGTGGAGAAGTGCTCTTCTTTGGCGTACTTTCTTCACAACGGCTATAGTAGCAGTGATATTGACAAGTTTAAGCGAGTTTTGCCGAGGCGGTTCGTGCGGGCTGTTTGGGGAAGGCGGTCTAATCATGTTTGATGTCAACTCAAAGAAGCCTGATTATAGTGTATCTGATATTTTAACAGTCATACTTCTTGGAGTGATTGGAGGTGTTCTTGGAAGCCTCTACAATTATTTTGTGGATAAAGTCCTACGCACTTACAAAATCATTAACGAGAGGGGTCCTAAAATCAAGATTGTTCTTGTAATCGTTATTTCTCTTTTGACGTCTTGTTGTTCGTTTGGCCTCCCTTGGCTTTCACGATGCATACCCTGCCCTGATGATCTTGGTGATCAGTGTCCTACTATCGGTCGATCAGGTAACTTCAAGAATTTCCAGTGTCCACCTAAGCATTACAATGATCTTGCGTCCCTCTTTTTTACAACCAATGATGATGCTATCCGCAATTTGTTTACCTCTGGTTCTTCCAAGGAATTTCAACTTTCTACACTTGTAATATTCTTTGTGGCTATCTATTTCCTTGGAATTGTCACTTATGGCATTGCCATTCCATCTGGACTATTCATCCCTGTCATGCTTGCTGGATCTTCATATGGCCGTTTTGTTGGGACCATTGCAAGCACATTCACCCATCTCGACTCGGGTCTTTACGCCATTCTTGGAGCAGCATCCTTCCTTGGTGGGACAATGAGAATGACCGTCTCTCTCTGTGTCATAATTCTTGAATTAACAAATGATCTTCTCATACTCCCATTGGTGATGCTGGTTCTCCTTATCTCGAAAACTGTAGCTGATTGTTTCAACAAGGGTATTTATGATCAGATCGTAAAAATGAAAGGCCTGCCTTTTCTGGAAGCACATGCAGAACCACACATGAGACATTTAGTTGCTAGTGATGTTATTTCTGGGTCCTTGTTTACATTTTCTGGTGTTGAAAAAGTAAGGAACATTGTGCAGACATTGAAGATGACAGGCCATAATGGATTCCCTGTGATTAATGAGCCTCCTTTCTCTGATGCTCCTGAGCTATGTGGTCTGGTTTTGAGGTCTCATCTGCTGATCCTCCTTATGGGGAAGAGATTCACCAAGCAGAAGGTGATGACTGGGTCTGATATTATGGCGAGATTCAAGACACGTGACTACTTTGCAAAGGCGGGATCAGGAAAAGTGCCAAAGCTAGAGGGTTTGGATATGAAAGAGGAGGAGATGGAAATGTATGTTGATCTGCACCCCATTACTAATTTCTCCCCATATACTGTTGTTGAAACAATGTCACTGGCAAAAGCAGCTGTTCTCTTTCGTGAGCTTGGATTAAGACACTTGCTGGTTATTCCAAAAACACCAGGAAGACCTCCGATTGTGGGAATCCTGACGAGGCATGATTTTATGTCGGAACATGTGCTCGGACTTTATCCACACATGAATCCAAGCAATACAGAAATTTAA 1956 0.4381 MLKEKYYQAFASFAGCNMAMAIAASALCAYIAPAASGSGIPEVKAYLNGIDAHSILAPSTLLVKIFGSIFGVAGGFVMGKEGPMVHTGACVASLLGQGGSRKCSLTWKWLRYFKNDRDRRDLITCGTAAGVAAAFRAPVGGVLFALEEVASWWRSALLWRTFFTTAIVAVILTSLSEFCRGGSCGLFGEGGLIMFDVNSKKPDYSVSDILTVILLGVIGGVLGSLYNYFVDKVLRTYKIINERGPKIKIVLVIVISLLTSCCSFGLPWLSRCIPCPDDLGDQCPTIGRSGNFKNFQCPPKHYNDLASLFFTTNDDAIRNLFTSGSSKEFQLSTLVIFFVAIYFLGIVTYGIAIPSGLFIPVMLAGSSYGRFVGTIASTFTHLDSGLYAILGAASFLGGTMRMTVSLCVIILELTNDLLILPLVMLVLLISKTVADCFNKGIYDQIVKMKGLPFLEAHAEPHMRHLVASDVISGSLFTFSGVEKVRNIVQTLKMTGHNGFPVINEPPFSDAPELCGLVLRSHLLILLMGKRFTKQKVMTGSDIMARFKTRDYFAKAGSGKVPKLEGLDMKEEEMEMYVDLHPITNFSPYTVVETMSLAKAAVLFRELGLRHLLVIPKTPGRPPIVGILTRHDFMSEHVLGLYPHMNPSNTEI* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00023 651 Gene3D - 456 635 IPR046342 -
Pte18g00023 651 Pfam CBS domain 586 634 IPR000644 -
Pte18g00023 651 CDD CBS_pair_voltage-gated_CLC_euk_bac 467 635 - -
Pte18g00023 651 SUPERFAMILY Clc chloride channel 10 457 IPR014743 -
Pte18g00023 651 SMART cbs_1 586 637 IPR000644 -
Pte18g00023 651 SMART cbs_1 474 527 IPR000644 -
Pte18g00023 651 SUPERFAMILY CBS-domain pair 458 634 IPR046342 -
Pte18g00023 651 Gene3D Clc chloride channel 2 455 - -
Pte18g00023 651 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Pte18g00023 651 PRINTS Chloride channel signature 353 373 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte18g00023 651 PRINTS Chloride channel signature 403 422 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte18g00023 651 PRINTS Chloride channel signature 33 50 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte18g00023 651 PRINTS Chloride channel signature 385 401 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte18g00023 651 PRINTS Chloride channel signature 441 455 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte18g00023 651 PRINTS Chloride channel signature 128 147 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte18g00023 651 PRINTS Chloride channel signature 64 83 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte18g00023 651 Pfam Voltage gated chloride channel 21 435 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte18g00023 651 PRINTS Plant CLC chloride channel signature 163 173 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte18g00023 651 PRINTS Plant CLC chloride channel signature 181 188 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte18g00023 651 PRINTS Plant CLC chloride channel signature 305 321 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte18g00023 651 PRINTS Plant CLC chloride channel signature 149 157 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte18g00023 651 ProSiteProfiles CBS domain profile. 582 647 IPR000644 -
Pte18g00023 651 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 5 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00023 Pte-Chr18 655252 659808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00023 1 646 Ion Channels AT5G49890 75.425 0.0 980
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00023 K05016 - jre:108988922 1058.9