Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00020 ATGGCCGAGGTTTCTGAAACCAATGGGAACCATGATGTTGTGTTGAGTGTCAAGAACGAGAATAACCCCAAAACCCAGGACTCTGGCATCTATGTCTCTGTTCCTTTCATTCAAAAGTTGATTGCAGAGGTTTTAGGCACATACTTTCTGATATTTGCTGGCTGTGGCTCCGTGGTAGTGAACAAGGGCAACGACAATGTGATAACTATGCCAGGAATTGCATTCACTTGGGGACTTGCTGTCATGGTATTGGTTTACTCTGTCGGCCACATCTCTGGTGCCCATTTCAACCCTGCTGTCACTCTTGCTTTTGCATCTACCAAAAGGTTCCCCCTGAAACAGGTACCAGCTTATATTGCTGCCCAAGTCCTTGGATCAACACTAGCAAGTGGAACCCTAAGATTACTCTTCCAGGGAAAGCATGATTTCTTCACGGGGACTCTTCCTAGTGGCTCTGATTTACAGTCCTTTGTGATTGAAATCATAATCACCTTCTACCTTATGTTCGTCATATCCGGCGTTGCCACAGACAACAGAGCGATCGGAGAGCTTGCTGGTCTTGCAGTTGGATCAACCGTGCTGCTCAATGTGATGTTTGCAGGACCAATTACAGGGGCATCCATGAATCCAGCTAGAAGCATAGGGCCAGCTATTGTATCAAGGCAATACAAAGGAATTTGGATATACTTATTGGCACCCACTGTTGGGGCCGTAGCTGGTGCTTGGGTATACAATTTGGTAAGATACACTGACAAGCCATTGCGTGAGATCACCAAGAGTGGCTCTTTTCTTAGAGCTGATGGCCGTGGAAACTGA 816 0.4645 MAEVSETNGNHDVVLSVKNENNPKTQDSGIYVSVPFIQKLIAEVLGTYFLIFAGCGSVVVNKGNDNVITMPGIAFTWGLAVMVLVYSVGHISGAHFNPAVTLAFASTKRFPLKQVPAYIAAQVLGSTLASGTLRLLFQGKHDFFTGTLPSGSDLQSFVIEIIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSIGPAIVSRQYKGIWIYLLAPTVGAVAGAWVYNLVRYTDKPLREITKSGSFLRADGRGN* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00020 271 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
Pte18g00020 271 PANTHER AQUAPORIN NIP2-1 20 264 IPR034294 -
Pte18g00020 271 FunFam Aquaporin NIP1-1 1 257 - -
Pte18g00020 271 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00020 271 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00020 271 Gene3D Glycerol uptake facilitator protein. 3 258 IPR023271 -
Pte18g00020 271 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00020 271 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00020 271 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00020 271 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00020 271 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00020 271 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00020 271 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte18g00020 271 ProSitePatterns MIP family signature. 95 103 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00020 Pte-Chr18 632140 634310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00020 34 266 Major Intrinsic Protein MIP AT5G37810 63.948 2.08e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00020 K09874 - mnt:21388091 419.853